Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODJ entry

There are 2 chains in PDB entry 2ODJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1HIS 426
B
 GLY 1HIS 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2ODJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
353 358Right-handed alpha
Helix 2
2
B
399 402Right-handed 310
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There are 4 sheets in PDB entry 2ODJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 20 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
227 239anti-parallel
Strand 3
A
254 262anti-parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
314 322anti-parallel
Strand 6
A
332 344anti-parallel
Strand 7
A
365 377anti-parallel
Strand 8
A
387 397anti-parallel
Strand 9
A
407 421anti-parallel
Strand 10
A
18 31anti-parallel
Strand 11
A
40 51anti-parallel
Strand 12
A
59 74anti-parallel
Strand 13
A
98 108anti-parallel
Strand 14
A
111 118anti-parallel
Strand 15
A
137 144anti-parallel
Strand 16
A
150 157anti-parallel
Strand 17
A
184 191anti-parallel
Strand 18
A
197 206anti-parallel
Strand 19
A
210 224anti-parallel
Strand 20
A
227 239anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
172 174anti-parallel
Strand 3
A
283 284anti-parallel
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There are 19 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 31first strand
Strand 2
B
39 51anti-parallel
Strand 3
B
60 76anti-parallel
Strand 4
B
97 108anti-parallel
Strand 5
B
111 118anti-parallel
Strand 6
B
137 144anti-parallel
Strand 7
B
150 158anti-parallel
Strand 8
B
183 191anti-parallel
Strand 9
B
197 206anti-parallel
Strand 10
B
210 224anti-parallel
Strand 11
B
227 239anti-parallel
Strand 12
B
250 262anti-parallel
Strand 13
B
265 276anti-parallel
Strand 14
B
314 323anti-parallel
Strand 15
B
332 344anti-parallel
Strand 16
B
365 377anti-parallel
Strand 17
B
387 397anti-parallel
Strand 18
B
407 418anti-parallel
Strand 19
B
18 31anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
283 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il