Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ODO entry

There are 12 chains in PDB entry 2ODO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 32
A	ALA 34	LEU 121
A	LEU 123	GLY 356
B	MET 1	ILE 32
B	ALA 34	LEU 121
B	LEU 123	GLY 356
C	MET 1	ILE 32
C	ALA 34	LEU 121
C	LEU 123	GLY 356
D	MET 1	ILE 32
D	ALA 34	LEU 121
D	LEU 123	GLY 356

There are 62 helices in PDB entry 2ODO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	25	Right-handed alpha
Helix 2	2	A	32	39	Right-handed alpha
Helix 3	3	A	40	49	Right-handed alpha
Helix 4	4	A	50	52	Right-handed 310
Helix 5	5	A	59	68	Right-handed alpha
Helix 6	6	A	83	85	Right-handed 310
Helix 7	7	A	86	93	Right-handed alpha
Helix 8	8	A	101	111	Right-handed alpha
Helix 9	9	A	133	146	Right-handed alpha
Helix 10	10	A	168	182	Right-handed alpha
Helix 11	11	A	192	199	Right-handed alpha
Helix 12	12	A	210	215	Right-handed 310
Helix 13	13	A	225	229	Right-handed 310
Helix 14	14	A	252	256	Right-handed 310
Helix 15	15	A	328	336	Right-handed alpha
Helix 16	16	A	339	346	Right-handed alpha
Helix 17	17	B	10	25	Right-handed alpha
Helix 18	18	B	32	38	Right-handed alpha
Helix 19	19	B	40	50	Right-handed alpha
Helix 20	20	B	59	70	Right-handed alpha
Helix 21	21	B	83	85	Right-handed 310
Helix 22	22	B	86	94	Right-handed alpha
Helix 23	23	B	101	111	Right-handed alpha
Helix 24	24	B	133	146	Right-handed alpha
Helix 25	25	B	168	182	Right-handed alpha
Helix 26	26	B	192	199	Right-handed alpha
Helix 27	27	B	210	215	Right-handed 310
Helix 28	28	B	224	229	Right-handed 310
Helix 29	29	B	252	256	Right-handed 310
Helix 30	30	B	328	336	Right-handed alpha
Helix 31	31	B	339	346	Right-handed alpha
Helix 32	32	C	10	25	Right-handed alpha
Helix 33	33	C	32	39	Right-handed alpha
Helix 34	34	C	40	49	Right-handed alpha
Helix 35	35	C	50	52	Right-handed 310
Helix 36	36	C	59	69	Right-handed alpha
Helix 37	37	C	83	85	Right-handed 310
Helix 38	38	C	86	93	Right-handed alpha
Helix 39	39	C	101	111	Right-handed alpha
Helix 40	40	C	133	146	Right-handed alpha
Helix 41	41	C	168	182	Right-handed alpha
Helix 42	42	C	192	199	Right-handed alpha
Helix 43	43	C	210	215	Right-handed 310
Helix 44	44	C	225	229	Right-handed 310
Helix 45	45	C	252	256	Right-handed 310
Helix 46	46	C	328	336	Right-handed alpha
Helix 47	47	C	339	346	Right-handed alpha
Helix 48	48	D	10	25	Right-handed alpha
Helix 49	49	D	32	38	Right-handed alpha
Helix 50	50	D	40	49	Right-handed alpha
Helix 51	51	D	59	69	Right-handed alpha
Helix 52	52	D	83	85	Right-handed 310
Helix 53	53	D	86	93	Right-handed alpha
Helix 54	54	D	101	111	Right-handed alpha
Helix 55	55	D	136	146	Right-handed alpha
Helix 56	56	D	168	182	Right-handed alpha
Helix 57	57	D	192	199	Right-handed alpha
Helix 58	58	D	210	215	Right-handed 310
Helix 59	59	D	225	229	Right-handed 310
Helix 60	60	D	252	256	Right-handed 310
Helix 61	61	D	328	336	Right-handed alpha
Helix 62	62	D	339	346	Right-handed alpha

There are 19 sheets in PDB entry 2ODO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	233	245	anti-parallel
Strand 4	A	319	323	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	233	245	anti-parallel
Strand 4	A	5	9	anti-parallel
Strand 5	A	352	355	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	54	57	parallel
Strand 3	A	75	77	parallel
Strand 4	A	96	99	parallel
Strand 5	A	117	123	parallel
Strand 6	A	150	157	parallel
Strand 7	A	187	189	parallel
Strand 8	A	206	207	parallel
Strand 9	A	27	31	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	291	292	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	233	245	anti-parallel
Strand 4	B	319	323	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	233	245	anti-parallel
Strand 4	B	5	9	anti-parallel
Strand 5	B	352	355	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	54	57	parallel
Strand 3	B	75	77	parallel
Strand 4	B	95	99	parallel
Strand 5	B	117	123	parallel
Strand 6	B	150	157	parallel
Strand 7	B	187	189	parallel
Strand 8	B	206	207	parallel
Strand 9	B	27	31	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	257	258	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	291	292	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	233	245	anti-parallel
Strand 4	C	319	323	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	233	245	anti-parallel
Strand 4	C	5	9	anti-parallel
Strand 5	C	352	355	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	206	207	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	55	57	parallel
Strand 3	C	75	77	parallel
Strand 4	C	96	99	parallel
Strand 5	C	117	123	parallel
Strand 6	C	150	157	parallel
Strand 7	C	187	189	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	291	292	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	263	268	anti-parallel
Strand 3	D	233	245	anti-parallel
Strand 4	D	319	323	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	263	268	anti-parallel
Strand 3	D	233	245	anti-parallel
Strand 4	D	5	9	anti-parallel
Strand 5	D	352	355	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	206	207	parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	55	57	parallel
Strand 3	D	75	77	parallel
Strand 4	D	96	99	parallel
Strand 5	D	117	123	parallel
Strand 6	D	150	157	parallel
Strand 7	D	188	189	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	291	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ODO

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODO