Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2ODR entry

There are 4 chains in PDB entry 2ODR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	UNK 2276
B	ILE 31	UNK 2275
C	ARG 4	UNK 2275
D	ARG 4	UNK 2276

There are 84 helices in PDB entry 2ODR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	14	Right-handed alpha
Helix 2	2	A	14	23	Right-handed alpha
Helix 3	3	A	24	26	Right-handed 310
Helix 4	4	A	34	38	Right-handed 310
Helix 5	5	A	46	62	Right-handed alpha
Helix 6	6	A	75	83	Right-handed alpha
Helix 7	7	A	85	92	Right-handed alpha
Helix 8	8	A	187	199	Right-handed alpha
Helix 9	9	A	242	256	Right-handed alpha
Helix 10	10	A	302	309	Right-handed alpha
Helix 11	11	A	322	330	Right-handed alpha
Helix 12	12	A	334	340	Right-handed alpha
Helix 13	13	A	341	344	Right-handed 310
Helix 14	14	A	349	355	Right-handed alpha
Helix 15	15	A	365	382	Right-handed alpha
Helix 16	16	A	449	460	Right-handed alpha
Helix 17	17	A	467	482	Right-handed alpha
Helix 18	18	A	508	518	Right-handed alpha
Helix 19	19	A	2215	2223	Right-handed alpha
Helix 20	20	A	2230	2243	Right-handed alpha
Helix 21	21	A	2250	2257	Right-handed alpha
Helix 22	22	A	2267	2274	Right-handed alpha
Helix 23	23	B	34	38	Right-handed 310
Helix 24	24	B	46	62	Right-handed alpha
Helix 25	25	B	75	83	Right-handed alpha
Helix 26	26	B	85	92	Right-handed alpha
Helix 27	27	B	187	199	Right-handed alpha
Helix 28	28	B	242	256	Right-handed alpha
Helix 29	29	B	302	309	Right-handed alpha
Helix 30	30	B	322	330	Right-handed alpha
Helix 31	31	B	334	340	Right-handed alpha
Helix 32	32	B	341	344	Right-handed 310
Helix 33	33	B	349	355	Right-handed alpha
Helix 34	34	B	365	382	Right-handed alpha
Helix 35	35	B	449	460	Right-handed alpha
Helix 36	36	B	467	482	Right-handed alpha
Helix 37	37	B	508	518	Right-handed alpha
Helix 38	38	B	2215	2222	Right-handed alpha
Helix 39	39	B	2233	2243	Right-handed alpha
Helix 40	40	B	2250	2256	Right-handed alpha
Helix 41	41	B	2266	2274	Right-handed alpha
Helix 42	42	C	4	14	Right-handed alpha
Helix 43	43	C	14	23	Right-handed alpha
Helix 44	44	C	24	26	Right-handed 310
Helix 45	45	C	46	62	Right-handed alpha
Helix 46	46	C	75	83	Right-handed alpha
Helix 47	47	C	85	92	Right-handed alpha
Helix 48	48	C	187	199	Right-handed alpha
Helix 49	49	C	242	256	Right-handed alpha
Helix 50	50	C	302	309	Right-handed alpha
Helix 51	51	C	322	330	Right-handed alpha
Helix 52	52	C	334	340	Right-handed alpha
Helix 53	53	C	341	344	Right-handed 310
Helix 54	54	C	349	357	Right-handed alpha
Helix 55	55	C	508	518	Right-handed alpha
Helix 56	56	C	1365	1382	Right-handed alpha
Helix 57	57	C	1449	1460	Right-handed alpha
Helix 58	58	C	1467	1483	Right-handed alpha
Helix 59	59	C	2215	2223	Right-handed alpha
Helix 60	60	C	2230	2243	Right-handed alpha
Helix 61	61	C	2247	2259	Right-handed alpha
Helix 62	62	C	2266	2274	Right-handed alpha
Helix 63	63	D	4	14	Right-handed alpha
Helix 64	64	D	14	23	Right-handed alpha
Helix 65	65	D	24	26	Right-handed 310
Helix 66	66	D	30	34	Right-handed 310
Helix 67	67	D	46	62	Right-handed alpha
Helix 68	68	D	75	83	Right-handed alpha
Helix 69	69	D	85	92	Right-handed alpha
Helix 70	70	D	187	199	Right-handed alpha
Helix 71	71	D	242	256	Right-handed alpha
Helix 72	72	D	302	309	Right-handed alpha
Helix 73	73	D	322	330	Right-handed alpha
Helix 74	74	D	334	340	Right-handed alpha
Helix 75	75	D	341	344	Right-handed 310
Helix 76	76	D	349	356	Right-handed alpha
Helix 77	77	D	508	518	Right-handed alpha
Helix 78	78	D	1365	1382	Right-handed alpha
Helix 79	79	D	1449	1460	Right-handed alpha
Helix 80	80	D	1466	1483	Right-handed alpha
Helix 81	81	D	2216	2222	Right-handed alpha
Helix 82	82	D	2233	2243	Right-handed alpha
Helix 83	83	D	2250	2256	Right-handed alpha
Helix 84	84	D	2266	2274	Right-handed alpha

There are 17 sheets in PDB entry 2ODR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	206	215	parallel
Strand 3	A	228	237	anti-parallel
Strand 4	A	315	321	anti-parallel
Strand 5	A	291	300	anti-parallel
Strand 6	A	280	286	anti-parallel
Strand 7	A	262	266	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	181	183	anti-parallel
Strand 3	A	94	97	anti-parallel
Strand 4	B	94	97	anti-parallel
Strand 5	B	181	183	anti-parallel
Strand 6	B	72	74	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	505	507	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	427	431	anti-parallel
Strand 3	A	461	466	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1491	1494	first strand
Strand 2	A	1530	1536	anti-parallel
Strand 3	A	1404	1411	anti-parallel
Strand 4	A	1390	1397	anti-parallel
Strand 5	A	1992	1996	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	206	215	parallel
Strand 3	B	228	237	anti-parallel
Strand 4	B	315	321	anti-parallel
Strand 5	B	291	300	anti-parallel
Strand 6	B	280	286	anti-parallel
Strand 7	B	262	266	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	505	507	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	427	431	anti-parallel
Strand 3	B	461	466	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1491	1492	first strand
Strand 2	B	1534	1535	anti-parallel
Strand 3	B	1404	1411	anti-parallel
Strand 4	B	1390	1397	anti-parallel
Strand 5	B	1992	1995	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	206	215	parallel
Strand 3	C	228	237	anti-parallel
Strand 4	C	315	321	anti-parallel
Strand 5	C	291	300	anti-parallel
Strand 6	C	280	286	anti-parallel
Strand 7	C	262	266	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	177	183	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	D	94	97	anti-parallel
Strand 5	D	181	183	anti-parallel
Strand 6	D	72	74	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	427	431	anti-parallel
Strand 3	C	1461	1466	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1391	1392	first strand
Strand 2	C	1408	1410	anti-parallel
Strand 3	C	1535	1536	anti-parallel
Strand 4	C	1490	1491	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	206	215	parallel
Strand 3	D	228	237	anti-parallel
Strand 4	D	315	321	anti-parallel
Strand 5	D	291	300	anti-parallel
Strand 6	D	280	286	anti-parallel
Strand 7	D	262	266	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	358	first strand
Strand 2	D	506	507	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	429	431	anti-parallel
Strand 3	D	1461	1462	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1391	1392	first strand
Strand 2	D	1408	1410	anti-parallel
Strand 3	D	1535	1536	anti-parallel
Strand 4	D	1490	1491	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2ODR

Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODR