Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODT entry

There is 1 chain in PDB entry 2ODT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 LYS 6GLY 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2ODT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
15 23Right-handed alpha
Helix 2
2
X
23 34Right-handed alpha
Helix 3
3
X
47 51Right-handed 310
Helix 4
4
X
60 69Right-handed alpha
Helix 5
5
X
71 87Right-handed alpha
Helix 6
6
X
96 104Right-handed alpha
Helix 7
7
X
105 121Right-handed alpha
Helix 8
8
X
137 139Right-handed 310
Helix 9
9
X
140 148Right-handed alpha
Helix 10
10
X
174 181Right-handed 310
Helix 11
11
X
232 236Right-handed alpha
Helix 12
12
X
242 246Right-handed 310
Helix 13
13
X
258 274Right-handed alpha
Helix 14
14
X
307 322Right-handed alpha
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There are 3 sheets in PDB entry 2ODT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
37 40first strand
Strand 2
X
9 13parallel
Strand 3
X
55 58parallel
Strand 4
X
92 94parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
130 133first strand
Strand 2
X
185 189anti-parallel
Strand 3
X
154 157anti-parallel
Strand 4
X
168 172anti-parallel
Strand 5
X
228 231anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
206 213first strand
Strand 2
X
196 203anti-parallel
Strand 3
X
277 284anti-parallel
Strand 4
X
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il