Analysis of interatomic Contacts of Structural Units in PDB entry:
2OFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OFP entry

There are 2 chains in PDB entry 2OFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 292
B
 SER 0GLU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2OFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
57 63Right-handed alpha
Helix 3
3
A
75 84Right-handed alpha
Helix 4
4
A
102 106Right-handed 310
Helix 5
5
A
149 158Right-handed alpha
Helix 6
6
A
169 191Right-handed alpha
Helix 7
7
A
193 199Right-handed 310
Helix 8
8
A
200 218Right-handed alpha
Helix 9
9
A
223 238Right-handed alpha
Helix 10
10
A
243 251Right-handed alpha
Helix 11
11
A
256 259Right-handed 310
Helix 12
12
A
260 271Right-handed alpha
Helix 13
13
A
275 291Right-handed alpha
Helix 14
14
B
9 22Right-handed alpha
Helix 15
15
B
57 63Right-handed alpha
Helix 16
16
B
72 84Right-handed alpha
Helix 17
17
B
101 106Right-handed alpha
Helix 18
18
B
149 158Right-handed alpha
Helix 19
19
B
169 191Right-handed alpha
Helix 20
20
B
193 199Right-handed 310
Helix 21
21
B
200 217Right-handed alpha
Helix 22
22
B
223 238Right-handed alpha
Helix 23
23
B
243 251Right-handed alpha
Helix 24
24
B
256 259Right-handed 310
Helix 25
25
B
260 271Right-handed alpha
Helix 26
26
B
275 291Right-handed alpha
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There are 4 sheets in PDB entry 2OFP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
2 6parallel
Strand 3
A
66 69parallel
Strand 4
A
93 96parallel
Strand 5
A
113 118parallel
Strand 6
A
137 141anti-parallel
Strand 7
A
163 165parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
128 133parallel
Strand 4
A
121 125anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
2 6parallel
Strand 3
B
66 69parallel
Strand 4
B
93 96parallel
Strand 5
B
113 118parallel
Strand 6
B
137 141anti-parallel
Strand 7
B
163 165parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
128 133parallel
Strand 4
B
121 125anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il