Analysis of interatomic Contacts of Structural Units in PDB entry:
2OG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OG4 entry

There is 1 chain in PDB entry 2OG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2148SER 2396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2OG4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2148 2160Right-handed alpha
Helix 2
2
A
2161 2167Right-handed 310
Helix 3
3
A
2187 2196Right-handed alpha
Helix 4
4
A
2270 2282Right-handed alpha
Helix 5
5
A
2308 2317Right-handed alpha
Helix 6
6
A
2330 2332Right-handed 310
Helix 7
7
A
2362 2366Right-handed 310
Helix 8
8
A
2384 2388Right-handed 310
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There are 3 sheets in PDB entry 2OG4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2169 2171first strand
Strand 2
A
2299 2307parallel
Strand 3
A
2289 2296anti-parallel
Strand 4
A
2254 2262parallel
Strand 5
A
2204 2211anti-parallel
Strand 6
A
2218 2225anti-parallel
Strand 7
A
2348 2352parallel
Strand 8
A
2374 2376anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2169 2171first strand
Strand 2
A
2299 2307parallel
Strand 3
A
2334 2342anti-parallel
Strand 4
A
2182 2186parallel
Strand 5
A
2218 2225parallel
Strand 6
A
2348 2352parallel
Strand 7
A
2374 2376anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2229 2231first strand
Strand 2
A
2236 2238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il