Analysis of interatomic Contacts of Structural Units in PDB entry:
2OGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OGD entry

There are 2 chains in PDB entry 2OGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 367
B
 MET 1LYS 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2OGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 25Right-handed alpha
Helix 2
2
A
28 44Right-handed alpha
Helix 3
3
A
48 62Right-handed alpha
Helix 4
4
A
75 107Right-handed alpha
Helix 5
5
A
118 121Right-handed 310
Helix 6
6
A
125 148Right-handed alpha
Helix 7
7
A
153 177Right-handed alpha
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
201 213Right-handed alpha
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
218 229Right-handed alpha
Helix 12
12
A
231 235Right-handed 310
Helix 13
13
A
236 262Right-handed alpha
Helix 14
14
A
263 268Right-handed alpha
Helix 15
15
A
280 290Right-handed alpha
Helix 16
16
A
291 300Right-handed alpha
Helix 17
17
A
306 320Right-handed alpha
Helix 18
18
A
321 348Right-handed alpha
Helix 19
19
A
348 361Right-handed alpha
Helix 20
20
B
1 25Right-handed alpha
Helix 21
21
B
28 44Right-handed alpha
Helix 22
22
B
48 62Right-handed alpha
Helix 23
23
B
75 108Right-handed alpha
Helix 24
24
B
118 121Right-handed 310
Helix 25
25
B
125 149Right-handed alpha
Helix 26
26
B
153 177Right-handed alpha
Helix 27
27
B
181 185Right-handed 310
Helix 28
28
B
201 213Right-handed alpha
Helix 29
29
B
213 218Right-handed alpha
Helix 30
30
B
218 229Right-handed alpha
Helix 31
31
B
231 235Right-handed 310
Helix 32
32
B
236 262Right-handed alpha
Helix 33
33
B
263 268Right-handed alpha
Helix 34
34
B
280 290Right-handed alpha
Helix 35
35
B
291 302Right-handed alpha
Helix 36
36
B
306 320Right-handed alpha
Helix 37
37
B
321 346Right-handed alpha
Helix 38
38
B
348 363Right-handed alpha
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There are 2 sheets in PDB entry 2OGD. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
115 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il