Analysis of interatomic Contacts of Structural Units in PDB entry:
2OGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OGJ entry

There are 12 chains in PDB entry 2OGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LEU 174
A
 VAL 176ALA 396
B
 PRO 16LEU 174
B
 VAL 176TYR 392
C
 LEU 19LEU 174
C
 VAL 176ILE 393
D
 PRO 16LEU 174
D
 VAL 176ILE 393
E
 GLN 14LEU 174
E
 VAL 176TYR 392
F
 PRO 16LEU 174
F
 VAL 176ILE 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 2OGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 94Right-handed 310
Helix 2
2
A
95 98Right-handed 310
Helix 3
3
A
113 121Right-handed alpha
Helix 4
4
A
151 155Right-handed 310
Helix 5
5
A
156 166Right-handed alpha
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
188 202Right-handed alpha
Helix 8
8
A
215 223Right-handed alpha
Helix 9
9
A
244 254Right-handed alpha
Helix 10
10
A
271 281Right-handed alpha
Helix 11
11
A
303 314Right-handed alpha
Helix 12
12
A
317 324Right-handed alpha
Helix 13
13
A
326 333Right-handed alpha
Helix 14
14
B
90 94Right-handed 310
Helix 15
15
B
95 98Right-handed 310
Helix 16
16
B
113 121Right-handed alpha
Helix 17
17
B
151 155Right-handed 310
Helix 18
18
B
156 166Right-handed alpha
Helix 19
19
B
179 184Right-handed alpha
Helix 20
20
B
188 202Right-handed alpha
Helix 21
21
B
215 223Right-handed alpha
Helix 22
22
B
244 254Right-handed alpha
Helix 23
23
B
271 281Right-handed alpha
Helix 24
24
B
293 298Right-handed alpha
Helix 25
25
B
303 314Right-handed alpha
Helix 26
26
B
317 324Right-handed alpha
Helix 27
27
B
326 333Right-handed alpha
Helix 28
28
C
95 98Right-handed 310
Helix 29
29
C
110 112Right-handed 310
Helix 30
30
C
113 121Right-handed alpha
Helix 31
31
C
151 155Right-handed 310
Helix 32
32
C
156 168Right-handed alpha
Helix 33
33
C
179 184Right-handed alpha
Helix 34
34
C
188 200Right-handed alpha
Helix 35
35
C
215 223Right-handed alpha
Helix 36
36
C
244 254Right-handed alpha
Helix 37
37
C
274 280Right-handed alpha
Helix 38
38
C
303 311Right-handed alpha
Helix 39
39
C
317 324Right-handed alpha
Helix 40
40
C
326 333Right-handed alpha
Helix 41
41
D
90 94Right-handed 310
Helix 42
42
D
113 121Right-handed alpha
Helix 43
43
D
151 155Right-handed 310
Helix 44
44
D
156 168Right-handed alpha
Helix 45
45
D
179 184Right-handed alpha
Helix 46
46
D
188 202Right-handed alpha
Helix 47
47
D
215 221Right-handed alpha
Helix 48
48
D
244 255Right-handed alpha
Helix 49
49
D
271 281Right-handed alpha
Helix 50
50
D
303 313Right-handed alpha
Helix 51
51
D
317 324Right-handed alpha
Helix 52
52
D
326 333Right-handed alpha
Helix 53
53
E
90 94Right-handed 310
Helix 54
54
E
95 98Right-handed 310
Helix 55
55
E
110 112Right-handed 310
Helix 56
56
E
113 121Right-handed alpha
Helix 57
57
E
156 168Right-handed alpha
Helix 58
58
E
179 184Right-handed alpha
Helix 59
59
E
188 202Right-handed alpha
Helix 60
60
E
211 214Right-handed 310
Helix 61
61
E
215 223Right-handed alpha
Helix 62
62
E
244 254Right-handed alpha
Helix 63
63
E
274 275Right-handed 310
Helix 64
64
E
277 279Right-handed 310
Helix 65
65
E
303 315Right-handed alpha
Helix 66
66
E
317 324Right-handed alpha
Helix 67
67
E
326 333Right-handed alpha
Helix 68
68
F
90 94Right-handed 310
Helix 69
69
F
95 98Right-handed 310
Helix 70
70
F
113 121Right-handed alpha
Helix 71
71
F
151 155Right-handed 310
Helix 72
72
F
156 168Right-handed alpha
Helix 73
73
F
179 184Right-handed alpha
Helix 74
74
F
188 201Right-handed alpha
Helix 75
75
F
215 223Right-handed alpha
Helix 76
76
F
244 254Right-handed alpha
Helix 77
77
F
274 280Right-handed alpha
Helix 78
78
F
293 299Right-handed alpha
Helix 79
79
F
303 314Right-handed alpha
Helix 80
80
F
317 324Right-handed alpha
Helix 81
81
F
326 333Right-handed alpha
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There are 17 sheets in PDB entry 2OGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
59 61parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
68 71parallel
Strand 5
A
348 362anti-parallel
Strand 6
A
368 382anti-parallel
Strand 7
A
385 388anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
100 106parallel
Strand 3
A
128 134parallel
Strand 4
A
171 178parallel
Strand 5
A
205 209parallel
Strand 6
A
228 230parallel
Strand 7
A
260 262parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
36 40anti-parallel
Strand 3
B
17 24anti-parallel
Strand 4
B
59 61parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
36 40anti-parallel
Strand 3
B
17 24anti-parallel
Strand 4
B
68 71parallel
Strand 5
B
348 362anti-parallel
Strand 6
B
368 382anti-parallel
Strand 7
B
385 388anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
100 110parallel
Strand 3
B
128 134parallel
Strand 4
B
171 178parallel
Strand 5
B
205 209parallel
Strand 6
B
228 230parallel
Strand 7
B
260 265parallel
Strand 8
B
287 290parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
68 71parallel
Strand 3
C
348 352anti-parallel
Strand 4
C
377 382anti-parallel
Strand 5
C
386 388anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 78first strand
Strand 2
C
100 106parallel
Strand 3
C
128 134parallel
Strand 4
C
171 178parallel
Strand 5
C
205 209parallel
Strand 6
C
228 230parallel
Strand 7
C
260 264parallel
Strand 8
C
287 289parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 48first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
17 24anti-parallel
Strand 4
D
61 62parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 48first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
17 24anti-parallel
Strand 4
D
68 70parallel
Strand 5
D
348 362anti-parallel
Strand 6
D
368 382anti-parallel
Strand 7
D
385 388anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 78first strand
Strand 2
D
100 106parallel
Strand 3
D
128 134parallel
Strand 4
D
171 178parallel
Strand 5
D
205 209parallel
Strand 6
D
228 230parallel
Strand 7
D
260 261parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 50first strand
Strand 2
E
36 40anti-parallel
Strand 3
E
17 24anti-parallel
Strand 4
E
59 61parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 50first strand
Strand 2
E
36 40anti-parallel
Strand 3
E
17 24anti-parallel
Strand 4
E
68 71parallel
Strand 5
E
348 362anti-parallel
Strand 6
E
368 382anti-parallel
Strand 7
E
386 388anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
73 78first strand
Strand 2
E
100 109parallel
Strand 3
E
128 134parallel
Strand 4
E
171 176parallel
Strand 5
E
205 208parallel
Strand 6
E
228 230parallel
Strand 7
E
260 261parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 18first strand
Strand 2
F
39 40anti-parallel
Strand 3
F
46 48anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
23 24first strand
Strand 2
F
68 71parallel
Strand 3
F
348 362anti-parallel
Strand 4
F
368 382anti-parallel
Strand 5
F
386 388anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
73 78first strand
Strand 2
F
100 106parallel
Strand 3
F
128 134parallel
Strand 4
F
171 178parallel
Strand 5
F
205 209parallel
Strand 6
F
228 230parallel
Strand 7
F
260 262parallel
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