Analysis of interatomic Contacts of Structural Units in PDB entry:
2OGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OGT entry

There is 1 chain in PDB entry 2OGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3GLN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2OGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
122 130Right-handed alpha
Helix 4
4
A
140 145Right-handed alpha
Helix 5
5
A
153 157Right-handed 310
Helix 6
6
A
158 160Right-handed 310
Helix 7
7
A
161 178Right-handed alpha
Helix 8
8
A
179 181Right-handed 310
Helix 9
9
A
194 206Right-handed alpha
Helix 10
10
A
207 210Right-handed 310
Helix 11
11
A
229 245Right-handed alpha
Helix 12
12
A
250 257Right-handed alpha
Helix 13
13
A
258 268Right-handed alpha
Helix 14
14
A
287 294Right-handed alpha
Helix 15
15
A
309 314Right-handed alpha
Helix 16
16
A
319 324Right-handed alpha
Helix 17
17
A
325 338Right-handed alpha
Helix 18
18
A
341 348Right-handed alpha
Helix 19
19
A
362 371Right-handed alpha
Helix 20
20
A
371 385Right-handed alpha
Helix 21
21
A
412 418Right-handed alpha
Helix 22
22
A
431 453Right-handed alpha
Helix 23
23
A
488 496Right-handed alpha
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There are 2 sheets in PDB entry 2OGT. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
Strand 3
A
51 53parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
183 193parallel
Strand 7
A
215 219parallel
Strand 8
A
302 307parallel
Strand 9
A
389 394parallel
Strand 10
A
473 477parallel
Strand 11
A
482 485anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il