Analysis of interatomic Contacts of Structural Units in PDB entry:
2OGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OGX entry

There are 2 chains in PDB entry 2OGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31ALA 276
B
 ASN 3SER 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2OGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 52Right-handed alpha
Helix 2
2
A
54 69Right-handed alpha
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
97 121Right-handed alpha
Helix 5
5
A
122 124Right-handed 310
Helix 6
6
A
129 144Right-handed alpha
Helix 7
7
A
155 159Right-handed 310
Helix 8
8
A
169 182Right-handed alpha
Helix 9
9
A
204 208Right-handed 310
Helix 10
10
A
216 221Right-handed alpha
Helix 11
11
A
229 238Right-handed alpha
Helix 12
12
A
254 261Right-handed alpha
Helix 13
13
B
4 15Right-handed alpha
Helix 14
14
B
19 28Right-handed alpha
Helix 15
15
B
48 51Right-handed 310
Helix 16
16
B
52 67Right-handed alpha
Helix 17
17
B
79 92Right-handed alpha
Helix 18
18
B
95 119Right-handed alpha
Helix 19
19
B
120 122Right-handed 310
Helix 20
20
B
132 138Right-handed alpha
Helix 21
21
B
152 156Right-handed 310
Helix 22
22
B
168 181Right-handed alpha
Helix 23
23
B
213 219Right-handed alpha
Helix 24
24
B
227 237Right-handed alpha
Helix 25
25
B
252 259Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2OGX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
73 78parallel
Strand 3
A
41 46parallel
Strand 4
A
185 190parallel
Strand 5
A
244 249parallel
Strand 6
A
267 270anti-parallel
Strand 7
A
213 215parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
210 211anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
71 76parallel
Strand 3
B
38 43parallel
Strand 4
B
184 189parallel
Strand 5
B
242 247parallel
Strand 6
B
265 268anti-parallel
Strand 7
B
210 212parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
207 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il