Analysis of interatomic Contacts of Structural Units in PDB entry:
2OI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OI2 entry

There is 1 chain in PDB entry 2OI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2OI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed 310
Helix 2
2
A
55 69Right-handed alpha
Helix 3
3
A
86 90Right-handed 310
Helix 4
4
A
91 108Right-handed alpha
Helix 5
5
A
112 127Right-handed alpha
Helix 6
6
A
133 140Right-handed alpha
Helix 7
7
A
174 185Right-handed alpha
Helix 8
8
A
186 188Right-handed 310
Helix 9
9
A
189 209Right-handed alpha
Helix 10
10
A
211 229Right-handed alpha
Helix 11
11
A
233 245Right-handed alpha
Helix 12
12
A
268 283Right-handed alpha
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There are 3 sheets in PDB entry 2OI2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 17first strand
Strand 2
A
28 44anti-parallel
Strand 3
A
75 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 17first strand
Strand 2
A
28 44anti-parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
152 155anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
286 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il