Analysis of interatomic Contacts of Structural Units in PDB entry:
2OJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OJ6 entry

There are 6 chains in PDB entry 2OJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 294	THR 455
B	PRO 294	THR 455
C	SER 293	PHE 454
D	ASN 295	PHE 454
E	PRO 294	PHE 454
F	PRO 294	THR 455

There are 12 helices in PDB entry 2OJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	310	315	Right-handed alpha
Helix 2	2	A	379	384	Right-handed 310
Helix 3	3	B	310	315	Right-handed alpha
Helix 4	4	B	379	384	Right-handed 310
Helix 5	5	C	310	315	Right-handed alpha
Helix 6	6	C	379	384	Right-handed 310
Helix 7	7	D	310	315	Right-handed alpha
Helix 8	8	D	379	384	Right-handed 310
Helix 9	9	E	310	315	Right-handed alpha
Helix 10	10	E	379	384	Right-handed 310
Helix 11	11	F	310	315	Right-handed alpha
Helix 12	12	F	379	384	Right-handed 310

There are 12 sheets in PDB entry 2OJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	303	first strand
Strand 2	A	306	309	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	394	404	anti-parallel
Strand 4	A	410	422	anti-parallel
Strand 5	A	425	431	anti-parallel
Strand 6	A	363	369	anti-parallel
Strand 7	A	316	328	anti-parallel
Strand 8	A	331	344	anti-parallel
Strand 9	A	347	352	anti-parallel
Strand 10	A	446	451	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	303	first strand
Strand 2	B	306	309	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	440	443	anti-parallel
Strand 3	B	394	404	anti-parallel
Strand 4	B	410	422	anti-parallel
Strand 5	B	425	431	anti-parallel
Strand 6	B	364	369	anti-parallel
Strand 7	B	316	328	anti-parallel
Strand 8	B	331	344	anti-parallel
Strand 9	B	347	352	anti-parallel
Strand 10	B	446	451	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	306	309	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	440	443	anti-parallel
Strand 3	C	394	404	anti-parallel
Strand 4	C	410	422	anti-parallel
Strand 5	C	425	431	anti-parallel
Strand 6	C	363	369	anti-parallel
Strand 7	C	316	328	anti-parallel
Strand 8	C	331	344	anti-parallel
Strand 9	C	347	352	anti-parallel
Strand 10	C	446	451	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	302	first strand
Strand 2	D	307	309	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	358	first strand
Strand 2	D	440	443	anti-parallel
Strand 3	D	394	404	anti-parallel
Strand 4	D	410	422	anti-parallel
Strand 5	D	425	431	anti-parallel
Strand 6	D	363	369	anti-parallel
Strand 7	D	316	328	anti-parallel
Strand 8	D	331	344	anti-parallel
Strand 9	D	347	352	anti-parallel
Strand 10	D	446	451	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	303	first strand
Strand 2	E	306	309	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	357	first strand
Strand 2	E	440	443	anti-parallel
Strand 3	E	394	404	anti-parallel
Strand 4	E	410	422	anti-parallel
Strand 5	E	425	431	anti-parallel
Strand 6	E	364	369	anti-parallel
Strand 7	E	316	328	anti-parallel
Strand 8	E	331	344	anti-parallel
Strand 9	E	347	352	anti-parallel
Strand 10	E	446	451	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	303	first strand
Strand 2	F	306	309	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	357	first strand
Strand 2	F	440	443	anti-parallel
Strand 3	F	394	404	anti-parallel
Strand 4	F	410	422	anti-parallel
Strand 5	F	425	431	anti-parallel
Strand 6	F	364	369	anti-parallel
Strand 7	F	316	328	anti-parallel
Strand 8	F	331	344	anti-parallel
Strand 9	F	347	352	anti-parallel
Strand 10	F	446	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OJ6