Analysis of interatomic Contacts of Structural Units in PDB entry:
2OJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OJV entry

There is 1 chain in PDB entry 2OJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2OJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 83Right-handed alpha
Helix 2
2
A
98 112Right-handed alpha
Helix 3
3
A
148 154Right-handed alpha
Helix 4
4
A
189 194Right-handed alpha
Helix 5
5
A
196 203Right-handed alpha
Helix 6
6
A
235 240Right-handed alpha
Helix 7
7
A
259 284Right-handed alpha
Helix 8
8
A
288 312Right-handed alpha
Helix 9
9
A
312 318Right-handed alpha
Helix 10
10
A
320 325Right-handed alpha
Helix 11
11
A
342 347Right-handed alpha
Helix 12
12
A
348 354Right-handed 310
Helix 13
13
A
377 380Right-handed 310
Helix 14
14
A
383 388Right-handed alpha
Helix 15
15
A
392 402Right-handed alpha
Helix 16
16
A
414 419Right-handed alpha
Helix 17
17
A
432 444Right-handed alpha
Helix 18
18
A
448 456Right-handed alpha
Helix 19
19
A
463 472Right-handed alpha
Helix 20
20
A
473 485Right-handed alpha
Helix 21
21
A
486 490Right-handed 310
Helix 22
22
A
491 499Right-handed alpha
Helix 23
23
A
508 525Right-handed alpha
Helix 24
24
A
537 545Right-handed alpha
Helix 25
25
A
548 557Right-handed alpha
Helix 26
26
A
580 582Right-handed 310
Helix 27
27
A
587 591Right-handed 310
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There are 7 sheets in PDB entry 2OJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
212 213anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
373 375anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
429 431anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 562first strand
Strand 2
A
577 578anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il