Analysis of interatomic Contacts of Structural Units in PDB entry:
2OM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OM7 entry

There are 18 chains in PDB entry 2OM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 339	G 350
B	U 367	G 394
C	G 1401	C 1501
D	G 52	U 359
F	C 2646	G 2674
G	G 1840	C 1902
H	G 2455	C 2496
I	G 1051	U 1108
J	G 2094	C 2195
M	U 1	A 7
M	A 9	G 19
M	A 22	U 48
M	G 50	G 53
M	C 56	A 76
E	PRO 5	ALA 129
K	LYS 18	ILE 224
L	GLU 6	ILE 688
N	VAL 7	GLU 241

There are 32 helices in PDB entry 2OM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	E	6	13	Right-handed alpha
Helix 2	2	K	22	26	Right-handed 310
Helix 3	3	L	8	10	Right-handed 310
Helix 4	4	L	24	37	Right-handed alpha
Helix 5	5	L	90	101	Right-handed alpha
Helix 6	6	L	115	128	Right-handed alpha
Helix 7	7	L	145	158	Right-handed alpha
Helix 8	8	L	202	222	Right-handed alpha
Helix 9	9	L	224	234	Right-handed alpha
Helix 10	10	L	238	252	Right-handed alpha
Helix 11	11	L	268	280	Right-handed alpha
Helix 12	12	L	418	435	Right-handed alpha
Helix 13	13	L	455	468	Right-handed alpha
Helix 14	14	L	535	537	Right-handed 310
Helix 15	15	L	538	550	Right-handed alpha
Helix 16	16	L	578	597	Right-handed alpha
Helix 17	17	L	617	627	Right-handed alpha
Helix 18	18	L	650	652	Right-handed 310
Helix 19	19	L	655	663	Right-handed alpha
Helix 20	20	L	680	688	Right-handed alpha
Helix 21	21	N	7	16	Right-handed alpha
Helix 22	22	N	25	31	Right-handed 310
Helix 23	23	N	43	63	Right-handed alpha
Helix 24	24	N	74	76	Right-handed 310
Helix 25	25	N	77	87	Right-handed alpha
Helix 26	26	N	101	103	Right-handed 310
Helix 27	27	N	104	123	Right-handed alpha
Helix 28	28	N	124	129	Right-handed 310
Helix 29	29	N	131	150	Right-handed alpha
Helix 30	30	N	167	169	Right-handed 310
Helix 31	31	N	170	180	Right-handed alpha
Helix 32	32	N	207	225	Right-handed alpha

There are 13 sheets in PDB entry 2OM7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	69	first strand
Strand 2	E	55	60	anti-parallel
Strand 3	E	33	40	anti-parallel
Strand 4	E	82	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	212	213	first strand
Strand 2	K	218	219	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	74	first strand
Strand 2	L	77	82	anti-parallel
Strand 3	L	12	19	parallel
Strand 4	L	103	109	parallel
Strand 5	L	132	137	parallel
Strand 6	L	256	260	parallel
Strand 7	L	161	163	parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	165	168	first strand
Strand 2	L	176	179	anti-parallel
Strand 3	L	184	188	anti-parallel
Strand 4	L	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	289	292	first strand
Strand 2	L	298	301	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	363	366	first strand
Strand 2	L	349	358	anti-parallel
Strand 3	L	374	379	anti-parallel
Strand 4	L	323	332	anti-parallel
Strand 5	L	310	319	anti-parallel
Strand 6	L	388	390	anti-parallel
Strand 7	L	339	343	anti-parallel
Strand 8	L	349	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	334	336	first strand
Strand 2	L	368	370	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	439	442	first strand
Strand 2	L	449	453	anti-parallel
Strand 3	L	409	415	anti-parallel
Strand 4	L	474	476	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	439	442	first strand
Strand 2	L	449	453	anti-parallel
Strand 3	L	409	415	anti-parallel
Strand 4	L	480	482	anti-parallel
Strand 5	L	653	654	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	491	499	first strand
Strand 2	L	506	516	anti-parallel
Strand 3	L	563	571	anti-parallel
Strand 4	L	523	527	parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	630	634	first strand
Strand 2	L	640	648	anti-parallel
Strand 3	L	602	613	anti-parallel
Strand 4	L	668	678	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	36	first strand
Strand 2	N	39	41	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	92	93	first strand
Strand 2	N	69	71	parallel
Strand 3	N	162	164	parallel
Strand 4	N	184	188	parallel
Strand 5	N	199	202	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OM7