Analysis of interatomic Contacts of Structural Units in PDB entry:
2OMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OMD entry

There are 2 chains in PDB entry 2OMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 135
B
 MET 1GLU 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2OMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 25Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
59 79Right-handed alpha
Helix 4
4
A
107 126Right-handed alpha
Helix 5
5
B
17 25Right-handed alpha
Helix 6
6
B
44 48Right-handed 310
Helix 7
7
B
59 79Right-handed alpha
Helix 8
8
B
107 126Right-handed alpha
Helix 9
9
B
137 141Right-handed 310
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There are 3 sheets in PDB entry 2OMD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
82 88parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
B
33 39anti-parallel
Strand 6
B
99 105anti-parallel
Strand 7
B
82 88anti-parallel
Strand 8
B
9 12parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
128 134anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
51 57anti-parallel
Strand 3
B
129 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il