Analysis of interatomic Contacts of Structural Units in PDB entry:
2OMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OMF entry

There is 1 chain in PDB entry 2OMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2OMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 112Right-handed 310
Helix 2
2
A
143 146Right-handed alpha
Helix 3
3
A
198 201Right-handed alpha
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There are 3 sheets in PDB entry 2OMF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 49first strand
Strand 2
A
9 23anti-parallel
Strand 3
A
331 340anti-parallel
Strand 4
A
307 316anti-parallel
Strand 5
A
289 302anti-parallel
Strand 6
A
269 281anti-parallel
Strand 7
A
253 264anti-parallel
Strand 8
A
225 235anti-parallel
Strand 9
A
210 222anti-parallel
Strand 10
A
185 195anti-parallel
Strand 11
A
173 182anti-parallel
Strand 12
A
151 158anti-parallel
Strand 13
A
136 141anti-parallel
Strand 14
A
94 100anti-parallel
Strand 15
A
80 90anti-parallel
Strand 16
A
55 66anti-parallel
Strand 17
A
40 50anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
247 250anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il