Analysis of interatomic Contacts of Structural Units in PDB entry:
2OMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OMK entry

There are 4 chains in PDB entry 2OMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -14CYS 37
A
 GLY 39TYR 207
B
 ASN -1CYS 37
B
 GLY 39TYR 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2OMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-11 -6Right-handed 310
Helix 2
2
A
21 31Right-handed alpha
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
62 70Right-handed alpha
Helix 6
6
A
82 94Right-handed alpha
Helix 7
7
A
108 125Right-handed alpha
Helix 8
8
A
179 184Right-handed 310
Helix 9
9
B
21 30Right-handed alpha
Helix 10
10
B
40 47Right-handed alpha
Helix 11
11
B
62 70Right-handed alpha
Helix 12
12
B
82 94Right-handed alpha
Helix 13
13
B
108 125Right-handed alpha
Helix 14
14
B
179 184Right-handed 310
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There are 4 sheets in PDB entry 2OMK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
53 55parallel
Strand 3
A
34 36parallel
Strand 4
A
10 13parallel
Strand 5
A
98 102parallel
Strand 6
A
128 132parallel
Strand 7
A
136 142anti-parallel
Strand 8
A
192 206anti-parallel
Strand 9
A
145 148anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
53 55parallel
Strand 3
A
34 36parallel
Strand 4
A
10 13parallel
Strand 5
A
98 102parallel
Strand 6
A
128 132parallel
Strand 7
A
136 142anti-parallel
Strand 8
A
192 206anti-parallel
Strand 9
A
154 168anti-parallel
Strand 10
A
186 187anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
53 55parallel
Strand 3
B
34 36parallel
Strand 4
B
10 13parallel
Strand 5
B
98 102parallel
Strand 6
B
128 132parallel
Strand 7
B
136 142anti-parallel
Strand 8
B
192 206anti-parallel
Strand 9
B
145 148anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
53 55parallel
Strand 3
B
34 36parallel
Strand 4
B
10 13parallel
Strand 5
B
98 102parallel
Strand 6
B
128 132parallel
Strand 7
B
136 142anti-parallel
Strand 8
B
192 206anti-parallel
Strand 9
B
154 168anti-parallel
Strand 10
B
186 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il