Analysis of interatomic Contacts of Structural Units in PDB entry:
2OO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OO8 entry

There is 1 chain in PDB entry 2OO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 836ASP 1117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2OO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
863 878Right-handed alpha
Helix 2
2
X
909 917Right-handed alpha
Helix 3
3
X
918 923Right-handed alpha
Helix 4
4
X
923 930Right-handed alpha
Helix 5
5
X
937 957Right-handed alpha
Helix 6
6
X
966 968Right-handed 310
Helix 7
7
X
974 976Right-handed 310
Helix 8
8
X
1001 1005Right-handed 310
Helix 9
9
X
1006 1013Right-handed alpha
Helix 10
10
X
1016 1033Right-handed alpha
Helix 11
11
X
1043 1051Right-handed alpha
Helix 12
12
X
1052 1054Right-handed 310
Helix 13
13
X
1064 1075Right-handed alpha
Helix 14
14
X
1078 1082Right-handed 310
Helix 15
15
X
1084 1098Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2OO8. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
837 842first strand
Strand 2
X
851 856anti-parallel
Strand 3
X
900 903anti-parallel
Strand 4
X
888 891anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
970 972first strand
Strand 2
X
978 980anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il