Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOD entry

There is 1 chain in PDB entry 2OOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3SER 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2OOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
25 28Right-handed 310
Helix 3
3
A
51 58Right-handed alpha
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
94 103Right-handed alpha
Helix 6
6
A
103 108Right-handed alpha
Helix 7
7
A
109 111Right-handed 310
Helix 8
8
A
112 130Right-handed alpha
Helix 9
9
A
142 157Right-handed alpha
Helix 10
10
A
178 194Right-handed alpha
Helix 11
11
A
207 211Right-handed 310
Helix 12
12
A
212 226Right-handed alpha
Helix 13
13
A
238 249Right-handed alpha
Helix 14
14
A
254 261Right-handed alpha
Helix 15
15
A
278 289Right-handed alpha
Helix 16
16
A
295 302Right-handed alpha
Helix 17
17
A
308 313Right-handed alpha
Helix 18
18
A
334 353Right-handed alpha
Helix 19
19
A
358 362Right-handed 310
Helix 20
20
A
363 370Right-handed alpha
Helix 21
21
A
373 381Right-handed alpha
Helix 22
22
A
382 389Right-handed alpha
Helix 23
23
A
417 423Right-handed alpha
Helix 24
24
A
433 448Right-handed alpha
Helix 25
25
A
449 451Right-handed 310
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There are 3 sheets in PDB entry 2OOD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
5 15anti-parallel
Strand 4
A
62 73parallel
Strand 5
A
406 409anti-parallel
Strand 6
A
453 458anti-parallel
Strand 7
A
461 465anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
132 138parallel
Strand 3
A
160 162parallel
Strand 4
A
199 205parallel
Strand 5
A
165 166parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
132 138parallel
Strand 3
A
160 162parallel
Strand 4
A
199 205parallel
Strand 5
A
230 234parallel
Strand 6
A
269 272parallel
Strand 7
A
291 294parallel
Strand 8
A
320 323parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il