Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOI entry

There are 2 chains in PDB entry 2OOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 73LYS 233
B
 ASN 73LYS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2OOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 86Right-handed 310
Helix 2
2
A
106 113Right-handed alpha
Helix 3
3
A
144 148Right-handed alpha
Helix 4
4
A
151 156Right-handed alpha
Helix 5
5
A
158 166Right-handed alpha
Helix 6
6
A
184 191Right-handed alpha
Helix 7
7
B
82 87Right-handed alpha
Helix 8
8
B
106 114Right-handed alpha
Helix 9
9
B
144 148Right-handed alpha
Helix 10
10
B
153 157Right-handed 310
Helix 11
11
B
158 166Right-handed alpha
Helix 12
12
B
184 191Right-handed alpha
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There are 2 sheets in PDB entry 2OOI. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
227 232parallel
Strand 3
B
171 182anti-parallel
Strand 4
B
198 208anti-parallel
Strand 5
B
213 222anti-parallel
Strand 6
B
133 143anti-parallel
Strand 7
B
121 130anti-parallel
Strand 8
B
92 102anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 102first strand
Strand 2
A
121 130anti-parallel
Strand 3
A
133 143anti-parallel
Strand 4
A
213 222anti-parallel
Strand 5
A
198 208anti-parallel
Strand 6
A
171 182anti-parallel
Strand 7
B
228 232anti-parallel
Strand 8
B
75 76parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il