Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOJ entry

There are 2 chains in PDB entry 2OOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2PRO 134
B
 MSE 1ALA 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2OOJ

There are 2 sheets in PDB entry 2OOJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
76 88anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
111 120anti-parallel
Strand 5
A
123 132anti-parallel
Strand 6
A
4 17anti-parallel
Strand 7
A
28 38anti-parallel
Strand 8
A
42 54anti-parallel
Strand 9
A
61 73anti-parallel
Strand 10
A
76 88anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
76 89anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
111 120anti-parallel
Strand 5
B
123 132anti-parallel
Strand 6
B
4 17anti-parallel
Strand 7
B
28 38anti-parallel
Strand 8
B
42 54anti-parallel
Strand 9
B
61 73anti-parallel
Strand 10
B
76 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il