Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOK entry

There are 2 chains in PDB entry 2OOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2TYR 126
B
 MSE 3TYR 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2OOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 46Right-handed alpha
Helix 2
2
A
69 74Right-handed 310
Helix 3
3
A
101 106Right-handed 310
Helix 4
4
A
116 126Right-handed alpha
Helix 5
5
B
30 46Right-handed alpha
Helix 6
6
B
69 74Right-handed 310
Helix 7
7
B
98 104Right-handed alpha
Helix 8
8
B
116 126Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2OOK. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
84 90parallel
Strand 3
A
55 65parallel
Strand 4
A
18 29parallel
Strand 5
A
5 15anti-parallel
Strand 6
B
5 15anti-parallel
Strand 7
B
18 29anti-parallel
Strand 8
B
62 65parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
84 90parallel
Strand 3
A
55 65parallel
Strand 4
A
18 29parallel
Strand 5
A
5 15anti-parallel
Strand 6
B
5 15anti-parallel
Strand 7
B
18 29anti-parallel
Strand 8
B
55 58parallel
Strand 9
B
84 90parallel
Strand 10
B
108 114parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il