Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOY entry

There are 6 chains in PDB entry 2OOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 447SER 575
B
 GLU 206ASP 297
G
 MET 2VAL 334
C
 ASN 450SER 575
D
 GLN 207ASP 297
E
 MET 2VAL 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 2OOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
461 477Right-handed alpha
Helix 2
2
A
491 494Right-handed 310
Helix 3
3
A
503 509Right-handed alpha
Helix 4
4
A
561 574Right-handed alpha
Helix 5
5
B
213 218Right-handed alpha
Helix 6
6
B
233 238Right-handed 310
Helix 7
7
B
258 262Right-handed 310
Helix 8
8
G
3 22Right-handed alpha
Helix 9
9
G
23 28Right-handed 310
Helix 10
10
G
42 53Right-handed alpha
Helix 11
11
G
73 85Right-handed alpha
Helix 12
12
G
92 99Right-handed 310
Helix 13
13
G
101 110Right-handed alpha
Helix 14
14
G
127 137Right-handed alpha
Helix 15
15
G
163 172Right-handed alpha
Helix 16
16
G
174 180Right-handed 310
Helix 17
17
G
203 214Right-handed alpha
Helix 18
18
G
234 242Right-handed alpha
Helix 19
19
G
246 251Right-handed 310
Helix 20
20
G
252 259Right-handed alpha
Helix 21
21
G
275 286Right-handed alpha
Helix 22
22
G
305 315Right-handed alpha
Helix 23
23
C
461 476Right-handed alpha
Helix 24
24
C
491 494Right-handed 310
Helix 25
25
C
561 574Right-handed alpha
Helix 26
26
D
258 262Right-handed 310
Helix 27
27
E
3 21Right-handed alpha
Helix 28
28
E
23 28Right-handed 310
Helix 29
29
E
42 53Right-handed alpha
Helix 30
30
E
73 86Right-handed alpha
Helix 31
31
E
94 100Right-handed 310
Helix 32
32
E
101 112Right-handed alpha
Helix 33
33
E
127 138Right-handed alpha
Helix 34
34
E
163 174Right-handed alpha
Helix 35
35
E
175 180Right-handed 310
Helix 36
36
E
203 215Right-handed alpha
Helix 37
37
E
234 242Right-handed alpha
Helix 38
38
E
245 251Right-handed 310
Helix 39
39
E
252 259Right-handed alpha
Helix 40
40
E
275 286Right-handed alpha
Helix 41
41
E
306 313Right-handed alpha
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There are 11 sheets in PDB entry 2OOY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
B
266 268anti-parallel
Strand 3
B
274 283anti-parallel
Strand 4
B
286 295anti-parallel
Strand 5
G
31 38parallel
Strand 6
G
58 62parallel
Strand 7
G
67 72anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
528 532anti-parallel
Strand 3
A
513 525anti-parallel
Strand 4
A
496 502anti-parallel
Strand 5
A
479 480anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
528 532anti-parallel
Strand 3
A
513 525anti-parallel
Strand 4
A
535 540anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
142 148first strand
Strand 2
G
155 162anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
218 222first strand
Strand 2
G
228 233anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
268 270first strand
Strand 2
G
291 294parallel
Strand 3
G
300 304anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
453 454first strand
Strand 2
D
266 268anti-parallel
Strand 3
D
274 283anti-parallel
Strand 4
D
286 295anti-parallel
Strand 5
E
31 38parallel
Strand 6
E
58 62parallel
Strand 7
E
67 72anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
456 459first strand
Strand 2
C
528 537anti-parallel
Strand 3
C
516 525anti-parallel
Strand 4
C
496 500anti-parallel
Strand 5
C
479 480anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 149first strand
Strand 2
E
154 162anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
218 221first strand
Strand 2
E
230 233anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
269 271first strand
Strand 2
E
290 294parallel
Strand 3
E
304 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il