Analysis of interatomic Contacts of Structural Units in PDB entry:
2OQ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OQ2 entry

There are 4 chains in PDB entry 2OQ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 256
B
 MET 1GLN 259
C
 MET 1LEU 257
D
 MET 1PHE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 2OQ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 9Right-handed 310
Helix 2
2
A
14 25Right-handed alpha
Helix 3
3
A
29 41Right-handed alpha
Helix 4
4
A
51 65Right-handed alpha
Helix 5
5
A
82 97Right-handed alpha
Helix 6
6
A
98 101Right-handed 310
Helix 7
7
A
114 123Right-handed alpha
Helix 8
8
A
125 130Right-handed alpha
Helix 9
9
A
130 139Right-handed alpha
Helix 10
10
A
139 150Right-handed alpha
Helix 11
11
A
160 170Right-handed 310
Helix 12
12
A
191 203Right-handed alpha
Helix 13
13
A
207 213Right-handed 310
Helix 14
14
A
219 223Right-handed 310
Helix 15
15
A
250 254Right-handed 310
Helix 16
16
B
7 9Right-handed 310
Helix 17
17
B
14 25Right-handed alpha
Helix 18
18
B
29 41Right-handed alpha
Helix 19
19
B
51 66Right-handed alpha
Helix 20
20
B
82 97Right-handed alpha
Helix 21
21
B
98 101Right-handed 310
Helix 22
22
B
114 123Right-handed alpha
Helix 23
23
B
125 130Right-handed alpha
Helix 24
24
B
130 139Right-handed alpha
Helix 25
25
B
139 150Right-handed alpha
Helix 26
26
B
160 170Right-handed 310
Helix 27
27
B
191 202Right-handed alpha
Helix 28
28
B
207 213Right-handed 310
Helix 29
29
B
249 252Right-handed 310
Helix 30
30
B
253 258Right-handed alpha
Helix 31
31
C
7 9Right-handed 310
Helix 32
32
C
14 25Right-handed alpha
Helix 33
33
C
29 41Right-handed alpha
Helix 34
34
C
51 65Right-handed alpha
Helix 35
35
C
82 97Right-handed alpha
Helix 36
36
C
98 101Right-handed 310
Helix 37
37
C
114 123Right-handed alpha
Helix 38
38
C
125 130Right-handed alpha
Helix 39
39
C
130 139Right-handed alpha
Helix 40
40
C
139 151Right-handed alpha
Helix 41
41
C
160 170Right-handed 310
Helix 42
42
C
191 202Right-handed alpha
Helix 43
43
C
207 213Right-handed 310
Helix 44
44
C
219 223Right-handed 310
Helix 45
45
C
250 254Right-handed 310
Helix 46
46
D
7 9Right-handed 310
Helix 47
47
D
14 25Right-handed alpha
Helix 48
48
D
29 41Right-handed alpha
Helix 49
49
D
51 65Right-handed alpha
Helix 50
50
D
82 97Right-handed alpha
Helix 51
51
D
98 101Right-handed 310
Helix 52
52
D
114 123Right-handed alpha
Helix 53
53
D
125 130Right-handed alpha
Helix 54
54
D
130 139Right-handed alpha
Helix 55
55
D
139 150Right-handed alpha
Helix 56
56
D
160 170Right-handed 310
Helix 57
57
D
191 202Right-handed alpha
Helix 58
58
D
207 213Right-handed 310
Helix 59
59
D
249 253Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 2OQ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
11 13anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
72 76parallel
Strand 3
A
44 47parallel
Strand 4
A
154 156parallel
Strand 5
A
181 184parallel
Strand 6
A
173 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
11 13anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
73 76parallel
Strand 3
B
44 47parallel
Strand 4
B
154 156parallel
Strand 5
B
181 184parallel
Strand 6
B
173 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
11 13anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 107first strand
Strand 2
C
73 76parallel
Strand 3
C
44 47parallel
Strand 4
C
154 156parallel
Strand 5
C
181 184parallel
Strand 6
C
173 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
11 13anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 107first strand
Strand 2
D
73 76parallel
Strand 3
D
44 47parallel
Strand 4
D
154 156parallel
Strand 5
D
181 184parallel
Strand 6
D
173 176anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il