Analysis of interatomic Contacts of Structural Units in PDB entry:
2OQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OQW entry

There are 2 chains in PDB entry 2OQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 35THR 232
A
 ASP 234ARG 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2OQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 56Right-handed alpha
Helix 2
2
A
68 70Right-handed 310
Helix 3
3
A
71 78Right-handed alpha
Helix 4
4
A
148 155Right-handed 310
Helix 5
5
A
156 163Right-handed alpha
Helix 6
6
A
198 212Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2OQW.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
120 122parallel
Strand 4
A
134 140anti-parallel
Strand 5
A
227 233parallel
Strand 6
A
244 252anti-parallel
Strand 7
A
174 184anti-parallel
Strand 8
A
165 170anti-parallel
Strand 9
A
81 86anti-parallel
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