Analysis of interatomic Contacts of Structural Units in PDB entry:
2OQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OQY entry

There are 8 chains in PDB entry 2OQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 374
B
 MET 1TRP 374
C
 MET 1TRP 374
D
 MET 1TRP 374
E
 MET 1TRP 374
F
 MET 1TRP 374
G
 MET 1TRP 374
H
 MET 1TRP 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are120 helices in PDB entry 2OQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 65Right-handed alpha
Helix 2
2
A
71 83Right-handed alpha
Helix 3
3
A
91 113Right-handed alpha
Helix 4
4
A
115 120Right-handed alpha
Helix 5
5
A
139 141Right-handed 310
Helix 6
6
A
142 156Right-handed alpha
Helix 7
7
A
168 184Right-handed alpha
Helix 8
8
A
199 211Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
249 259Right-handed alpha
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
274 288Right-handed alpha
Helix 13
13
A
300 312Right-handed alpha
Helix 14
14
A
324 329Right-handed 310
Helix 15
15
A
360 367Right-handed alpha
Helix 16
16
B
52 65Right-handed alpha
Helix 17
17
B
71 83Right-handed alpha
Helix 18
18
B
91 113Right-handed alpha
Helix 19
19
B
115 120Right-handed alpha
Helix 20
20
B
139 141Right-handed 310
Helix 21
21
B
142 156Right-handed alpha
Helix 22
22
B
168 184Right-handed alpha
Helix 23
23
B
199 211Right-handed alpha
Helix 24
24
B
228 239Right-handed alpha
Helix 25
25
B
249 259Right-handed alpha
Helix 26
26
B
268 273Right-handed alpha
Helix 27
27
B
274 288Right-handed alpha
Helix 28
28
B
300 312Right-handed alpha
Helix 29
29
B
324 329Right-handed 310
Helix 30
30
B
360 367Right-handed alpha
Helix 31
31
C
52 65Right-handed alpha
Helix 32
32
C
71 83Right-handed alpha
Helix 33
33
C
91 113Right-handed alpha
Helix 34
34
C
115 120Right-handed alpha
Helix 35
35
C
139 141Right-handed 310
Helix 36
36
C
142 156Right-handed alpha
Helix 37
37
C
168 184Right-handed alpha
Helix 38
38
C
199 211Right-handed alpha
Helix 39
39
C
228 239Right-handed alpha
Helix 40
40
C
249 259Right-handed alpha
Helix 41
41
C
268 273Right-handed alpha
Helix 42
42
C
274 288Right-handed alpha
Helix 43
43
C
300 312Right-handed alpha
Helix 44
44
C
324 329Right-handed 310
Helix 45
45
C
360 367Right-handed alpha
Helix 46
46
D
52 65Right-handed alpha
Helix 47
47
D
71 83Right-handed alpha
Helix 48
48
D
91 113Right-handed alpha
Helix 49
49
D
115 120Right-handed alpha
Helix 50
50
D
139 141Right-handed 310
Helix 51
51
D
142 156Right-handed alpha
Helix 52
52
D
168 184Right-handed alpha
Helix 53
53
D
199 211Right-handed alpha
Helix 54
54
D
228 239Right-handed alpha
Helix 55
55
D
249 259Right-handed alpha
Helix 56
56
D
268 273Right-handed alpha
Helix 57
57
D
274 288Right-handed alpha
Helix 58
58
D
300 312Right-handed alpha
Helix 59
59
D
324 329Right-handed 310
Helix 60
60
D
360 367Right-handed alpha
Helix 61
61
E
52 65Right-handed alpha
Helix 62
62
E
71 83Right-handed alpha
Helix 63
63
E
91 113Right-handed alpha
Helix 64
64
E
115 120Right-handed alpha
Helix 65
65
E
139 141Right-handed 310
Helix 66
66
E
142 156Right-handed alpha
Helix 67
67
E
168 184Right-handed alpha
Helix 68
68
E
199 211Right-handed alpha
Helix 69
69
E
228 239Right-handed alpha
Helix 70
70
E
249 259Right-handed alpha
Helix 71
71
E
268 273Right-handed alpha
Helix 72
72
E
274 288Right-handed alpha
Helix 73
73
E
300 312Right-handed alpha
Helix 74
74
E
324 329Right-handed 310
Helix 75
75
E
360 367Right-handed alpha
Helix 76
76
F
52 65Right-handed alpha
Helix 77
77
F
71 83Right-handed alpha
Helix 78
78
F
91 113Right-handed alpha
Helix 79
79
F
115 120Right-handed alpha
Helix 80
80
F
139 141Right-handed 310
Helix 81
81
F
142 156Right-handed alpha
Helix 82
82
F
168 184Right-handed alpha
Helix 83
83
F
199 211Right-handed alpha
Helix 84
84
F
228 239Right-handed alpha
Helix 85
85
F
249 259Right-handed alpha
Helix 86
86
F
268 273Right-handed alpha
Helix 87
87
F
274 288Right-handed alpha
Helix 88
88
F
300 312Right-handed alpha
Helix 89
89
F
324 329Right-handed 310
Helix 90
90
F
360 367Right-handed alpha
Helix 91
91
G
52 65Right-handed alpha
Helix 92
92
G
71 83Right-handed alpha
Helix 93
93
G
91 113Right-handed alpha
Helix 94
94
G
115 120Right-handed alpha
Helix 95
95
G
139 141Right-handed 310
Helix 96
96
G
142 156Right-handed alpha
Helix 97
97
G
168 184Right-handed alpha
Helix 98
98
G
199 211Right-handed alpha
Helix 99
99
G
228 239Right-handed alpha
Helix 100
100
G
249 259Right-handed alpha
Helix 101
101
G
268 273Right-handed alpha
Helix 102
102
G
274 288Right-handed alpha
Helix 103
103
G
300 312Right-handed alpha
Helix 104
104
G
324 329Right-handed 310
Helix 105
105
G
360 368Right-handed alpha
Helix 106
106
H
52 65Right-handed alpha
Helix 107
107
H
71 83Right-handed alpha
Helix 108
108
H
91 113Right-handed alpha
Helix 109
109
H
115 120Right-handed alpha
Helix 110
110
H
139 141Right-handed 310
Helix 111
111
H
142 156Right-handed alpha
Helix 112
112
H
168 184Right-handed alpha
Helix 113
113
H
199 211Right-handed alpha
Helix 114
114
H
228 239Right-handed alpha
Helix 115
115
H
249 259Right-handed alpha
Helix 116
116
H
268 273Right-handed alpha
Helix 117
117
H
274 288Right-handed alpha
Helix 118
118
H
300 312Right-handed alpha
Helix 119
119
H
324 329Right-handed 310
Helix 120
120
H
360 367Right-handed alpha
Back to top of page

There are 24 sheets in PDB entry 2OQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 14first strand
Strand 2
A
20 30anti-parallel
Strand 3
A
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
160 164parallel
Strand 3
A
188 193parallel
Strand 4
A
219 221parallel
Strand 5
A
243 246parallel
Strand 6
A
264 267parallel
Strand 7
A
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 14first strand
Strand 2
B
20 30anti-parallel
Strand 3
B
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
344 346anti-parallel
Strand 3
B
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
160 164parallel
Strand 3
B
188 193parallel
Strand 4
B
219 221parallel
Strand 5
B
243 246parallel
Strand 6
B
264 267parallel
Strand 7
B
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 14first strand
Strand 2
C
20 30anti-parallel
Strand 3
C
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 129first strand
Strand 2
C
344 346anti-parallel
Strand 3
C
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 134first strand
Strand 2
C
160 164parallel
Strand 3
C
188 193parallel
Strand 4
C
219 221parallel
Strand 5
C
243 246parallel
Strand 6
C
264 267parallel
Strand 7
C
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 14first strand
Strand 2
D
20 30anti-parallel
Strand 3
D
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 129first strand
Strand 2
D
344 346anti-parallel
Strand 3
D
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
160 164parallel
Strand 3
D
188 193parallel
Strand 4
D
219 221parallel
Strand 5
D
243 246parallel
Strand 6
D
264 267parallel
Strand 7
D
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 14first strand
Strand 2
E
20 30anti-parallel
Strand 3
E
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 129first strand
Strand 2
E
344 346anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 134first strand
Strand 2
E
160 164parallel
Strand 3
E
188 193parallel
Strand 4
E
219 221parallel
Strand 5
E
243 246parallel
Strand 6
E
264 267parallel
Strand 7
E
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 14first strand
Strand 2
F
20 30anti-parallel
Strand 3
F
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 129first strand
Strand 2
F
344 346anti-parallel
Strand 3
F
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
132 134first strand
Strand 2
F
160 164parallel
Strand 3
F
188 193parallel
Strand 4
F
219 221parallel
Strand 5
F
243 246parallel
Strand 6
F
264 267parallel
Strand 7
F
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 14first strand
Strand 2
G
20 30anti-parallel
Strand 3
G
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
127 129first strand
Strand 2
G
344 346anti-parallel
Strand 3
G
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
132 134first strand
Strand 2
G
160 164parallel
Strand 3
G
188 193parallel
Strand 4
G
219 221parallel
Strand 5
G
243 246parallel
Strand 6
G
264 267parallel
Strand 7
G
291 294parallel
Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 14first strand
Strand 2
H
20 30anti-parallel
Strand 3
H
35 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 129first strand
Strand 2
H
344 346anti-parallel
Strand 3
H
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 134first strand
Strand 2
H
160 164parallel
Strand 3
H
188 193parallel
Strand 4
H
219 221parallel
Strand 5
H
243 246parallel
Strand 6
H
264 267parallel
Strand 7
H
291 294parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il