Analysis of interatomic Contacts of Structural Units in PDB entry:
2OTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OTM entry

There are 3 chains in PDB entry 2OTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 2LEU 153
B
 MSE 1LEU 153
C
 ASN 3LEU 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2OTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
60 84Right-handed alpha
Helix 3
3
A
85 89Right-handed 310
Helix 4
4
A
107 124Right-handed alpha
Helix 5
5
A
125 128Right-handed 310
Helix 6
6
A
139 143Right-handed 310
Helix 7
7
B
4 12Right-handed alpha
Helix 8
8
B
60 84Right-handed alpha
Helix 9
9
B
85 89Right-handed 310
Helix 10
10
B
107 124Right-handed alpha
Helix 11
11
B
125 128Right-handed 310
Helix 12
12
B
139 143Right-handed 310
Helix 13
13
C
4 12Right-handed alpha
Helix 14
14
C
60 84Right-handed alpha
Helix 15
15
C
85 89Right-handed 310
Helix 16
16
C
107 124Right-handed alpha
Helix 17
17
C
125 128Right-handed 310
Helix 18
18
C
139 143Right-handed 310
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There are 6 sheets in PDB entry 2OTM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
145 152anti-parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
130 135parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
48 49anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
145 152anti-parallel
Strand 4
B
91 99anti-parallel
Strand 5
B
130 135parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
48 49anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
145 152anti-parallel
Strand 4
C
91 99anti-parallel
Strand 5
C
130 135parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il