Analysis of interatomic Contacts of Structural Units in PDB entry:
2OTW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OTW entry

There are 6 chains in PDB entry 2OTW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0VAL 114
B
 GLN 1SER 118
C
 MET 0VAL 114
D
 GLN 1SER 118
E
 GLN 1GLY 11
F
 GLN 1GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2OTW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
83 87Right-handed 310
Helix 3
3
B
28 32Right-handed 310
Helix 4
4
B
87 91Right-handed 310
Helix 5
5
C
26 29Right-handed 310
Helix 6
6
C
83 87Right-handed 310
Helix 7
7
D
28 32Right-handed 310
Helix 8
8
D
87 91Right-handed 310
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There are 12 sheets in PDB entry 2OTW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
66 71anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
110 113parallel
Strand 3
A
88 98anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 50anti-parallel
Strand 6
A
56 58anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
110 113parallel
Strand 3
A
88 98anti-parallel
Strand 4
A
101 106anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
103 108anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
74 79anti-parallel
Strand 4
C
66 71anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
110 113parallel
Strand 3
C
88 96anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
45 50anti-parallel
Strand 6
C
56 58anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
110 113parallel
Strand 3
C
88 96anti-parallel
Strand 4
C
103 106anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 59anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
103 108anti-parallel
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