Analysis of interatomic Contacts of Structural Units in PDB entry:
2OX1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OX1 entry

There are 4 chains in PDB entry 2OX1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 196
B
 MET 1GLY 196
C
 MET 1GLY 196
D
 MET 1GLY 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 2OX1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
56 72Right-handed alpha
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
105 115Right-handed alpha
Helix 6
6
A
129 143Right-handed alpha
Helix 7
7
A
152 155Right-handed 310
Helix 8
8
A
156 165Right-handed alpha
Helix 9
9
A
184 196Right-handed alpha
Helix 10
10
B
11 16Right-handed 310
Helix 11
11
B
46 50Right-handed 310
Helix 12
12
B
56 72Right-handed alpha
Helix 13
13
B
83 87Right-handed 310
Helix 14
14
B
105 115Right-handed alpha
Helix 15
15
B
129 143Right-handed alpha
Helix 16
16
B
152 156Right-handed 310
Helix 17
17
B
157 162Right-handed alpha
Helix 18
18
B
163 166Right-handed 310
Helix 19
19
B
184 196Right-handed alpha
Helix 20
20
C
10 16Right-handed alpha
Helix 21
21
C
46 50Right-handed 310
Helix 22
22
C
56 72Right-handed alpha
Helix 23
23
C
83 87Right-handed 310
Helix 24
24
C
105 115Right-handed alpha
Helix 25
25
C
129 143Right-handed alpha
Helix 26
26
C
152 154Right-handed 310
Helix 27
27
C
155 165Right-handed alpha
Helix 28
28
C
185 196Right-handed alpha
Helix 29
29
D
9 14Right-handed alpha
Helix 30
30
D
46 50Right-handed 310
Helix 31
31
D
56 72Right-handed alpha
Helix 32
32
D
83 87Right-handed 310
Helix 33
33
D
105 115Right-handed alpha
Helix 34
34
D
129 143Right-handed alpha
Helix 35
35
D
157 162Right-handed alpha
Helix 36
36
D
163 166Right-handed 310
Helix 37
37
D
184 196Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2OX1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
120 126parallel
Strand 3
A
92 99parallel
Strand 4
A
75 79parallel
Strand 5
A
39 43parallel
Strand 6
A
21 25parallel
Strand 7
A
2 7parallel
Strand 8
A
169 173parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
120 126parallel
Strand 3
B
92 99parallel
Strand 4
B
75 79parallel
Strand 5
B
39 43parallel
Strand 6
B
21 25parallel
Strand 7
B
2 7parallel
Strand 8
B
169 173parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
120 126parallel
Strand 3
C
92 99parallel
Strand 4
C
75 79parallel
Strand 5
C
39 43parallel
Strand 6
C
21 25parallel
Strand 7
C
2 7parallel
Strand 8
C
169 173parallel
Strand 9
C
183 184parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 151first strand
Strand 2
D
120 126parallel
Strand 3
D
92 99parallel
Strand 4
D
75 79parallel
Strand 5
D
40 43parallel
Strand 6
D
21 25parallel
Strand 7
D
2 7parallel
Strand 8
D
169 173parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il