Analysis of interatomic Contacts of Structural Units in PDB entry:
2OX8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OX8 entry

There are 4 chains in PDB entry 2OX8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 606	ARG 734
B	SER 606	ARG 734
C	SER 606	ARG 734
D	SER 606	ARG 734

There are 8 helices in PDB entry 2OX8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	627	638	Right-handed alpha
Helix 2	2	A	647	658	Right-handed alpha
Helix 3	3	B	628	637	Right-handed alpha
Helix 4	4	B	647	657	Right-handed alpha
Helix 5	5	C	627	638	Right-handed alpha
Helix 6	6	C	647	657	Right-handed alpha
Helix 7	7	D	627	638	Right-handed alpha
Helix 8	8	D	647	656	Right-handed alpha

There are 13 sheets in PDB entry 2OX8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	614	first strand
Strand 2	A	617	621	anti-parallel
Strand 3	A	727	733	anti-parallel
Strand 4	A	664	669	parallel
Strand 5	A	678	679	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	727	733	anti-parallel
Strand 3	A	664	669	parallel
Strand 4	A	708	711	anti-parallel
Strand 5	A	717	720	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	614	first strand
Strand 2	B	617	621	anti-parallel
Strand 3	B	725	733	anti-parallel
Strand 4	B	626	627	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	614	first strand
Strand 2	B	617	621	anti-parallel
Strand 3	B	725	733	anti-parallel
Strand 4	B	641	642	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	614	first strand
Strand 2	B	617	621	anti-parallel
Strand 3	B	725	733	anti-parallel
Strand 4	B	664	669	parallel
Strand 5	B	708	711	anti-parallel
Strand 6	B	717	720	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	614	first strand
Strand 2	B	617	621	anti-parallel
Strand 3	B	725	733	anti-parallel
Strand 4	B	664	669	parallel
Strand 5	B	678	679	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	627	first strand
Strand 2	B	725	733	anti-parallel
Strand 3	B	664	669	parallel
Strand 4	B	678	679	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	725	733	anti-parallel
Strand 3	B	664	669	parallel
Strand 4	B	678	679	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	725	733	anti-parallel
Strand 3	B	664	669	parallel
Strand 4	B	708	711	anti-parallel
Strand 5	B	717	720	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	614	first strand
Strand 2	C	617	621	anti-parallel
Strand 3	C	729	733	anti-parallel
Strand 4	C	641	642	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	679	first strand
Strand 2	C	664	669	anti-parallel
Strand 3	C	708	711	anti-parallel
Strand 4	C	717	720	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	614	first strand
Strand 2	D	617	621	anti-parallel
Strand 3	D	729	733	anti-parallel
Strand 4	D	641	642	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	679	first strand
Strand 2	D	664	669	anti-parallel
Strand 3	D	708	711	anti-parallel
Strand 4	D	717	720	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OX8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OX8