Analysis of interatomic Contacts of Structural Units in PDB entry:
2OX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OX9 entry

There are 4 chains in PDB entry 2OX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 606GLU 735
B
 CYS 607PRO 738
C
 CYS 607VAL 737
D
 GLY 606GLU 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2OX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
627 638Right-handed alpha
Helix 2
2
A
647 657Right-handed alpha
Helix 3
3
A
713 715Right-handed 310
Helix 4
4
B
627 638Right-handed alpha
Helix 5
5
B
647 659Right-handed alpha
Helix 6
6
B
713 715Right-handed 310
Helix 7
7
C
627 638Right-handed alpha
Helix 8
8
C
647 658Right-handed alpha
Helix 9
9
C
713 715Right-handed 310
Helix 10
10
D
627 637Right-handed alpha
Helix 11
11
D
647 657Right-handed alpha
Helix 12
12
D
699 703Right-handed 310
Helix 13
13
D
713 715Right-handed 310
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There are 8 sheets in PDB entry 2OX9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 614first strand
Strand 2
A
617 621anti-parallel
Strand 3
A
727 733anti-parallel
Strand 4
A
664 669parallel
Strand 5
A
678 679anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
641 642first strand
Strand 2
A
727 733anti-parallel
Strand 3
A
664 669parallel
Strand 4
A
708 711anti-parallel
Strand 5
A
717 720anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 614first strand
Strand 2
B
617 621anti-parallel
Strand 3
B
727 733anti-parallel
Strand 4
B
664 669parallel
Strand 5
B
678 679anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
641 642first strand
Strand 2
B
727 733anti-parallel
Strand 3
B
664 669parallel
Strand 4
B
708 711anti-parallel
Strand 5
B
717 720anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
612 614first strand
Strand 2
C
617 621anti-parallel
Strand 3
C
727 733anti-parallel
Strand 4
C
664 669parallel
Strand 5
C
678 679anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
641 642first strand
Strand 2
C
727 733anti-parallel
Strand 3
C
664 669parallel
Strand 4
C
708 711anti-parallel
Strand 5
C
717 720anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
612 614first strand
Strand 2
D
617 621anti-parallel
Strand 3
D
727 733anti-parallel
Strand 4
D
664 669parallel
Strand 5
D
678 679anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
641 642first strand
Strand 2
D
727 733anti-parallel
Strand 3
D
664 669parallel
Strand 4
D
708 711anti-parallel
Strand 5
D
717 720anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il