Analysis of interatomic Contacts of Structural Units in PDB entry:
2OXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OXB entry

There is 1 chain in PDB entry 2OXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5SER 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2OXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 78Right-handed 310
Helix 2
2
A
303 311Right-handed alpha
Helix 3
3
A
337 340Right-handed 310
Helix 4
4
A
381 385Right-handed 310
Helix 5
5
A
394 402Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2OXB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
19 30anti-parallel
Strand 5
A
312 313parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
107 114anti-parallel
Strand 4
A
125 127anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
195 196anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 211first strand
Strand 2
A
230 238anti-parallel
Strand 3
A
244 252anti-parallel
Strand 4
A
257 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 286first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
320 324anti-parallel
Strand 4
A
331 335anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
525 534anti-parallel
Strand 3
A
353 355anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
525 534anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
477 484anti-parallel
Strand 5
A
487 492anti-parallel
Strand 6
A
497 502anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 363first strand
Strand 2
A
514 519anti-parallel
Strand 3
A
410 419anti-parallel
Strand 4
A
427 435anti-parallel
Strand 5
A
386 387parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 363first strand
Strand 2
A
514 519anti-parallel
Strand 3
A
410 419anti-parallel
Strand 4
A
427 435anti-parallel
Strand 5
A
443 450anti-parallel
Strand 6
A
465 469anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il