Analysis of interatomic Contacts of Structural Units in PDB entry:
2OXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OXE entry

There are 2 chains in PDB entry 2OXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18CYS 469
B
 LYS 18CYS 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2OXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
75 81Right-handed alpha
Helix 4
4
A
103 113Right-handed alpha
Helix 5
5
A
125 130Right-handed alpha
Helix 6
6
A
132 159Right-handed alpha
Helix 7
7
A
161 163Right-handed 310
Helix 8
8
A
172 184Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
275 278Right-handed 310
Helix 11
11
A
279 295Right-handed alpha
Helix 12
12
A
306 312Right-handed alpha
Helix 13
13
A
329 333Right-handed 310
Helix 14
14
B
23 25Right-handed 310
Helix 15
15
B
48 53Right-handed alpha
Helix 16
16
B
75 80Right-handed alpha
Helix 17
17
B
103 116Right-handed alpha
Helix 18
18
B
125 130Right-handed alpha
Helix 19
19
B
133 159Right-handed alpha
Helix 20
20
B
161 163Right-handed 310
Helix 21
21
B
171 184Right-handed alpha
Helix 22
22
B
211 215Right-handed 310
Helix 23
23
B
275 279Right-handed 310
Helix 24
24
B
285 295Right-handed alpha
Helix 25
25
B
306 312Right-handed alpha
Helix 26
26
B
329 333Right-handed 310
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There are 8 sheets in PDB entry 2OXE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
27 29anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 70first strand
Strand 2
A
55 60anti-parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
88 93parallel
Strand 5
A
165 170parallel
Strand 6
A
190 194parallel
Strand 7
A
218 221parallel
Strand 8
A
243 247parallel
Strand 9
A
342 346parallel
Strand 10
A
302 303anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
235 236parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 396first strand
Strand 2
A
371 380anti-parallel
Strand 3
A
417 423anti-parallel
Strand 4
A
464 468anti-parallel
Strand 5
A
449 453anti-parallel
Strand 6
A
434 443anti-parallel
Strand 7
A
357 367anti-parallel
Strand 8
A
401 408anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
27 29anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
55 59anti-parallel
Strand 3
B
118 124anti-parallel
Strand 4
B
88 93parallel
Strand 5
B
165 170parallel
Strand 6
B
190 194parallel
Strand 7
B
217 221parallel
Strand 8
B
243 247parallel
Strand 9
B
342 346parallel
Strand 10
B
302 303anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
235 236parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 396first strand
Strand 2
B
371 380anti-parallel
Strand 3
B
417 423anti-parallel
Strand 4
B
464 468anti-parallel
Strand 5
B
449 453anti-parallel
Strand 6
B
434 443anti-parallel
Strand 7
B
357 367anti-parallel
Strand 8
B
401 408anti-parallel
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