Analysis of interatomic Contacts of Structural Units in PDB entry:
2OXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OXY entry

There are 2 chains in PDB entry 2OXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 7SER 333
B
SER 7SER 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2OXY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
26 29Right-handed 310
Helix 4
4
A
35 37Right-handed 310
Helix 5
5
A
74 89Right-handed alpha
Helix 6
6
A
120 125Right-handed alpha
Helix 7
7
A
126 128Right-handed 310
Helix 8
8
A
129 150Right-handed alpha
Helix 9
9
A
158 160Right-handed 310
Helix 10
10
A
166 169Right-handed 310
Helix 11
11
A
194 198Right-handed 310
Helix 12
12
A
199 204Right-handed alpha
Helix 13
13
A
211 228Right-handed alpha
Helix 14
14
A
237 250Right-handed alpha
Helix 15
15
A
250 262Right-handed alpha
Helix 16
16
A
266 274Right-handed alpha
Helix 17
17
A
280 285Right-handed 310
Helix 18
18
A
289 293Right-handed 310
Helix 19
19
A
294 305Right-handed alpha
Helix 20
20
A
308 312Right-handed 310
Helix 21
21
A
314 320Right-handed alpha
Helix 22
22
A
321 323Right-handed 310
Helix 23
23
A
324 331Right-handed alpha
Helix 24
24
B
14 19Right-handed alpha
Helix 25
25
B
20 25Right-handed alpha
Helix 26
26
B
26 29Right-handed 310
Helix 27
27
B
35 37Right-handed 310
Helix 28
28
B
74 89Right-handed alpha
Helix 29
29
B
120 125Right-handed alpha
Helix 30
30
B
126 128Right-handed 310
Helix 31
31
B
129 150Right-handed alpha
Helix 32
32
B
158 160Right-handed 310
Helix 33
33
B
194 198Right-handed 310
Helix 34
34
B
199 204Right-handed alpha
Helix 35
35
B
211 228Right-handed alpha
Helix 36
36
B
237 250Right-handed alpha
Helix 37
37
B
250 262Right-handed alpha
Helix 38
38
B
266 274Right-handed alpha
Helix 39
39
B
280 285Right-handed 310
Helix 40
40
B
289 293Right-handed 310
Helix 41
41
B
294 305Right-handed alpha
Helix 42
42
B
308 312Right-handed 310
Helix 43
43
B
314 320Right-handed alpha
Helix 44
44
B
321 323Right-handed 310
Helix 45
45
B
324 331Right-handed alpha
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There are 6 sheets in PDB entry 2OXY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 44first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
109 114anti-parallel
Strand 5
A
97 102anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 44first strand
Strand 2
B
52 58anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
109 114anti-parallel
Strand 5
B
97 102anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 153first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il