Analysis of interatomic Contacts of Structural Units in PDB entry:
2OY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OY1 entry

There is 1 chain in PDB entry 2OY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 MET 26LYS 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2OY1. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
O
263 271Right-handed alpha
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There are 3 sheets in PDB entry 2OY1. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
30 33first strand
Strand 2
O
39 42anti-parallel
Strand 3
O
52 58anti-parallel
Strand 4
O
61 67anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
74 79first strand
Strand 2
O
85 90anti-parallel
Strand 3
O
97 102anti-parallel
Strand 4
O
109 115anti-parallel
Strand 5
O
121 126anti-parallel
Strand 6
O
131 137anti-parallel
Strand 7
O
143 147anti-parallel
Strand 8
O
155 160anti-parallel
Strand 9
O
165 170anti-parallel
Strand 10
O
174 181anti-parallel
Strand 11
O
184 191anti-parallel
Strand 12
O
196 202anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
211 216first strand
Strand 2
O
221 226anti-parallel
Strand 3
O
229 236anti-parallel
Strand 4
O
242 246anti-parallel
Strand 5
O
259 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il