Analysis of interatomic Contacts of Structural Units in PDB entry:
2OYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OYC entry

There is 1 chain in PDB entry 2OYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2OYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
64 75Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
115 125Right-handed alpha
Helix 7
7
A
155 167Right-handed alpha
Helix 8
8
A
192 205Right-handed alpha
Helix 9
9
A
216 226Right-handed alpha
Helix 10
10
A
229 231Right-handed 310
Helix 11
11
A
242 251Right-handed alpha
Helix 12
12
A
263 273Right-handed alpha
Helix 13
13
A
275 279Right-handed 310
Helix 14
14
A
286 294Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2OYC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
282 284parallel
Strand 3
A
253 257parallel
Strand 4
A
233 237parallel
Strand 5
A
21 24parallel
Strand 6
A
53 58parallel
Strand 7
A
85 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
109 113parallel
Strand 3
A
143 148parallel
Strand 4
A
172 175parallel
Strand 5
A
209 210parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
189 191anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il