Analysis of interatomic Contacts of Structural Units in PDB entry:
2P0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P0U entry

There are 4 chains in PDB entry 2P0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8GLY 181
A
 PHE 183ALA 410
B
 MET 1GLY 181
B
 PHE 183ALA 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2P0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
53 62Right-handed alpha
Helix 3
3
A
67 80Right-handed alpha
Helix 4
4
A
91 97Right-handed alpha
Helix 5
5
A
98 103Right-handed 310
Helix 6
6
A
108 136Right-handed alpha
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
157 167Right-handed alpha
Helix 9
9
A
183 199Right-handed alpha
Helix 10
10
A
223 233Right-handed alpha
Helix 11
11
A
288 308Right-handed alpha
Helix 12
12
A
312 316Right-handed 310
Helix 13
13
A
324 335Right-handed alpha
Helix 14
14
A
338 341Right-handed 310
Helix 15
15
A
342 353Right-handed alpha
Helix 16
16
A
355 357Right-handed 310
Helix 17
17
A
358 374Right-handed alpha
Helix 18
18
B
53 62Right-handed alpha
Helix 19
19
B
67 80Right-handed alpha
Helix 20
20
B
91 97Right-handed alpha
Helix 21
21
B
98 103Right-handed 310
Helix 22
22
B
108 136Right-handed alpha
Helix 23
23
B
138 142Right-handed 310
Helix 24
24
B
157 167Right-handed alpha
Helix 25
25
B
183 198Right-handed alpha
Helix 26
26
B
211 215Right-handed 310
Helix 27
27
B
223 233Right-handed alpha
Helix 28
28
B
288 308Right-handed alpha
Helix 29
29
B
312 316Right-handed 310
Helix 30
30
B
324 335Right-handed alpha
Helix 31
31
B
338 341Right-handed 310
Helix 32
32
B
342 353Right-handed alpha
Helix 33
33
B
355 357Right-handed 310
Helix 34
34
B
358 374Right-handed alpha
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There are 7 sheets in PDB entry 2P0U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
144 149parallel
Strand 3
A
203 210parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
36 43anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
396 404anti-parallel
Strand 8
A
385 392anti-parallel
Strand 9
A
317 320parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
85 88anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
280 284anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
6 7anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 178first strand
Strand 2
B
144 149parallel
Strand 3
B
203 210parallel
Strand 4
B
236 243anti-parallel
Strand 5
B
36 43anti-parallel
Strand 6
B
255 264anti-parallel
Strand 7
B
396 404anti-parallel
Strand 8
B
385 392anti-parallel
Strand 9
B
317 320parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
85 88anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 277first strand
Strand 2
B
280 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il