Analysis of interatomic Contacts of Structural Units in PDB entry:
2P0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P0W entry

There are 4 chains in PDB entry 2P0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ASP 341
B
 GLY 18VAL 339
P
 LYS 5ARG 19
Q
 GLY 6ARG 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2P0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 32Right-handed alpha
Helix 2
2
A
40 45Right-handed 310
Helix 3
3
A
46 48Right-handed 310
Helix 4
4
A
56 61Right-handed alpha
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
133 136Right-handed 310
Helix 8
8
A
170 186Right-handed alpha
Helix 9
9
A
245 248Right-handed 310
Helix 10
10
A
251 266Right-handed alpha
Helix 11
11
A
279 295Right-handed alpha
Helix 12
12
A
297 300Right-handed 310
Helix 13
13
A
301 306Right-handed alpha
Helix 14
14
A
310 322Right-handed alpha
Helix 15
15
A
324 340Right-handed alpha
Helix 16
16
B
21 24Right-handed 310
Helix 17
17
B
29 32Right-handed alpha
Helix 18
18
B
40 48Right-handed 310
Helix 19
19
B
56 61Right-handed alpha
Helix 20
20
B
96 101Right-handed alpha
Helix 21
21
B
106 113Right-handed alpha
Helix 22
22
B
122 132Right-handed alpha
Helix 23
23
B
133 136Right-handed 310
Helix 24
24
B
170 186Right-handed alpha
Helix 25
25
B
245 248Right-handed 310
Helix 26
26
B
251 266Right-handed alpha
Helix 27
27
B
279 295Right-handed alpha
Helix 28
28
B
297 300Right-handed 310
Helix 29
29
B
301 307Right-handed alpha
Helix 30
30
B
310 322Right-handed alpha
Helix 31
31
B
324 339Right-handed alpha
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There are 8 sheets in PDB entry 2P0W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
65 67anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
73 79parallel
Strand 4
A
85 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
93 94anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 148first strand
Strand 2
A
157 164anti-parallel
Strand 3
A
199 210anti-parallel
Strand 4
A
213 229anti-parallel
Strand 5
A
233 243anti-parallel
Strand 6
A
274 275parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
65 67anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
73 79parallel
Strand 4
B
85 90anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
93 94anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 148first strand
Strand 2
B
157 164anti-parallel
Strand 3
B
199 210anti-parallel
Strand 4
B
213 229anti-parallel
Strand 5
B
233 243anti-parallel
Strand 6
B
274 275parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il