Analysis of interatomic Contacts of Structural Units in PDB entry:
2P1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P1J entry

There are 2 chains in PDB entry 2P1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 357MET 520
B
 THR 357HIS 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2P1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
403 411Right-handed alpha
Helix 2
2
A
413 418Right-handed alpha
Helix 3
3
A
422 434Right-handed alpha
Helix 4
4
A
443 460Right-handed alpha
Helix 5
5
A
470 478Right-handed alpha
Helix 6
6
A
484 492Right-handed alpha
Helix 7
7
A
500 517Right-handed alpha
Helix 8
8
B
403 411Right-handed alpha
Helix 9
9
B
413 418Right-handed alpha
Helix 10
10
B
422 434Right-handed alpha
Helix 11
11
B
443 460Right-handed alpha
Helix 12
12
B
470 478Right-handed alpha
Helix 13
13
B
484 493Right-handed alpha
Helix 14
14
B
501 520Right-handed alpha
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There are 2 sheets in PDB entry 2P1J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 395first strand
Strand 2
A
375 384anti-parallel
Strand 3
A
358 365anti-parallel
Strand 4
A
438 441parallel
Strand 5
A
467 469parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 395first strand
Strand 2
B
375 384anti-parallel
Strand 3
B
358 365anti-parallel
Strand 4
B
438 441parallel
Strand 5
B
467 469parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il