Analysis of interatomic Contacts of Structural Units in PDB entry:
2P38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P38 entry

There are 2 chains in PDB entry 2P38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5ASP 159
B
 LEU 5ASP 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2P38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
101 110Right-handed alpha
Helix 6
6
A
115 117Right-handed 310
Helix 7
7
B
11 24Right-handed alpha
Helix 8
8
B
47 54Right-handed alpha
Helix 9
9
B
60 65Right-handed alpha
Helix 10
10
B
84 89Right-handed alpha
Helix 11
11
B
101 110Right-handed alpha
Helix 12
12
B
115 117Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2P38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
66 73anti-parallel
Strand 5
A
79 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
129 133parallel
Strand 4
A
139 145anti-parallel
Strand 5
A
154 158anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
33 37anti-parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
66 73anti-parallel
Strand 5
B
79 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
97 100anti-parallel
Strand 3
B
129 133parallel
Strand 4
B
139 145anti-parallel
Strand 5
B
154 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il