Analysis of interatomic Contacts of Structural Units in PDB entry:
2P4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P4W entry

There are 2 chains in PDB entry 2P4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 197
B
 MET 1LEU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2P4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
14 27Right-handed alpha
Helix 3
3
A
30 39Right-handed alpha
Helix 4
4
A
41 55Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
119 170Right-handed alpha
Helix 7
7
A
170 182Right-handed alpha
Helix 8
8
A
186 195Right-handed alpha
Helix 9
9
B
2 12Right-handed alpha
Helix 10
10
B
14 25Right-handed alpha
Helix 11
11
B
30 39Right-handed alpha
Helix 12
12
B
41 55Right-handed alpha
Helix 13
13
B
104 116Right-handed alpha
Helix 14
14
B
119 166Right-handed alpha
Helix 15
15
B
170 182Right-handed alpha
Helix 16
16
B
186 198Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2P4W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
72 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 97first strand
Strand 2
A
80 87anti-parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
90 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
72 76anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il