Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2P5P entry

There are 3 chains in PDB entry 2P5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 300	SER 400
B	THR 300	SER 400
C	THR 300	SER 400

There is 1 helix in PDB entry 2P5P. Click on helix number for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	C	388	392	Right-handed 310

There are 11 sheets in PDB entry 2P5P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	317	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	361	362	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	340	345	anti-parallel
Strand 3	A	380	386	anti-parallel
Strand 4	A	393	399	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	316	317	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	371	375	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	361	362	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	343	first strand
Strand 2	B	380	386	anti-parallel
Strand 3	B	393	399	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	336	337	parallel
Strand 3	C	361	362	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	311	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	316	317	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	311	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	370	376	anti-parallel
Strand 4	C	354	355	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	380	386	anti-parallel
Strand 3	C	393	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2P5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5P