Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P5R entry

There are 2 chains in PDB entry 2P5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ILE 169
B
 SER 6ILE 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2P5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 14Right-handed 310
Helix 2
2
A
28 31Right-handed 310
Helix 3
3
A
48 62Right-handed alpha
Helix 4
4
A
113 120Right-handed alpha
Helix 5
5
A
155 158Right-handed 310
Helix 6
6
A
159 168Right-handed alpha
Helix 7
7
B
11 14Right-handed 310
Helix 8
8
B
28 31Right-handed 310
Helix 9
9
B
48 62Right-handed alpha
Helix 10
10
B
113 120Right-handed alpha
Helix 11
11
B
121 126Right-handed 310
Helix 12
12
B
155 158Right-handed 310
Helix 13
13
B
159 167Right-handed alpha
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There are 4 sheets in PDB entry 2P5R. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
24 26anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
34 41parallel
Strand 3
A
137 140anti-parallel
Strand 4
A
146 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
24 26anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
34 40parallel
Strand 3
B
137 140anti-parallel
Strand 4
B
146 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il