Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P5U entry

There are 4 chains in PDB entry 2P5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 311
B
 MET 1VAL 311
C
 MET 1VAL 311
D
 MET 1VAL 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 2P5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
54 66Right-handed alpha
Helix 4
4
A
78 85Right-handed alpha
Helix 5
5
A
85 94Right-handed alpha
Helix 6
6
A
94 107Right-handed alpha
Helix 7
7
A
118 122Right-handed alpha
Helix 8
8
A
141 162Right-handed alpha
Helix 9
9
A
185 196Right-handed alpha
Helix 10
10
A
220 234Right-handed alpha
Helix 11
11
A
248 260Right-handed alpha
Helix 12
12
A
282 287Right-handed alpha
Helix 13
13
A
295 310Right-handed alpha
Helix 14
14
B
10 23Right-handed alpha
Helix 15
15
B
37 41Right-handed 310
Helix 16
16
B
54 66Right-handed alpha
Helix 17
17
B
78 85Right-handed alpha
Helix 18
18
B
85 94Right-handed alpha
Helix 19
19
B
94 107Right-handed alpha
Helix 20
20
B
118 123Right-handed alpha
Helix 21
21
B
141 162Right-handed alpha
Helix 22
22
B
184 196Right-handed alpha
Helix 23
23
B
220 234Right-handed alpha
Helix 24
24
B
248 260Right-handed alpha
Helix 25
25
B
282 287Right-handed alpha
Helix 26
26
B
295 309Right-handed alpha
Helix 27
27
C
10 23Right-handed alpha
Helix 28
28
C
37 41Right-handed 310
Helix 29
29
C
54 66Right-handed alpha
Helix 30
30
C
78 85Right-handed alpha
Helix 31
31
C
85 94Right-handed alpha
Helix 32
32
C
94 107Right-handed alpha
Helix 33
33
C
118 122Right-handed alpha
Helix 34
34
C
141 162Right-handed alpha
Helix 35
35
C
182 184Right-handed 310
Helix 36
36
C
185 196Right-handed alpha
Helix 37
37
C
220 234Right-handed alpha
Helix 38
38
C
248 260Right-handed alpha
Helix 39
39
C
282 287Right-handed alpha
Helix 40
40
C
295 309Right-handed alpha
Helix 41
41
D
10 23Right-handed alpha
Helix 42
42
D
37 41Right-handed 310
Helix 43
43
D
54 66Right-handed alpha
Helix 44
44
D
78 85Right-handed alpha
Helix 45
45
D
85 94Right-handed alpha
Helix 46
46
D
94 107Right-handed alpha
Helix 47
47
D
118 122Right-handed alpha
Helix 48
48
D
141 162Right-handed alpha
Helix 49
49
D
184 197Right-handed alpha
Helix 50
50
D
220 234Right-handed alpha
Helix 51
51
D
248 260Right-handed alpha
Helix 52
52
D
282 287Right-handed alpha
Helix 53
53
D
295 309Right-handed alpha
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There are 16 sheets in PDB entry 2P5U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
69 72parallel
Strand 5
A
111 117parallel
Strand 6
A
164 170parallel
Strand 7
A
236 240parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
217 219parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
265 268parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
246 247anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
26 30parallel
Strand 3
B
2 6parallel
Strand 4
B
69 72parallel
Strand 5
B
111 117parallel
Strand 6
B
164 170parallel
Strand 7
B
236 240parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
217 219parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
265 268parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
246 247anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
26 30parallel
Strand 3
C
2 5parallel
Strand 4
C
69 72parallel
Strand 5
C
111 117parallel
Strand 6
C
164 170parallel
Strand 7
C
236 240parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
217 219parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 203first strand
Strand 2
C
265 268parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 215first strand
Strand 2
C
246 247anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 48first strand
Strand 2
D
26 30parallel
Strand 3
D
2 6parallel
Strand 4
D
69 72parallel
Strand 5
D
111 117parallel
Strand 6
D
164 170parallel
Strand 7
D
236 240parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
217 219parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 203first strand
Strand 2
D
265 268parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 215first strand
Strand 2
D
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il