Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2P5V entry

There are 8 chains in PDB entry 2P5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	LEU 158
B	GLN 3	LEU 158
C	THR 5	LEU 158
D	GLN 3	LEU 158
E	GLN 3	LEU 158
F	THR 5	LEU 158
G	MSE 1	LEU 158
H	THR 5	LEU 158

There are 57 helices in PDB entry 2P5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	20	Right-handed alpha
Helix 2	2	A	24	33	Right-handed alpha
Helix 3	3	A	35	49	Right-handed alpha
Helix 4	4	A	61	65	Right-handed 310
Helix 5	5	A	81	91	Right-handed alpha
Helix 6	6	A	116	127	Right-handed alpha
Helix 7	7	A	154	158	Right-handed 310
Helix 8	8	B	7	20	Right-handed alpha
Helix 9	9	B	24	33	Right-handed alpha
Helix 10	10	B	35	49	Right-handed alpha
Helix 11	11	B	61	65	Right-handed 310
Helix 12	12	B	81	92	Right-handed alpha
Helix 13	13	B	116	127	Right-handed alpha
Helix 14	14	B	154	158	Right-handed 310
Helix 15	15	C	7	20	Right-handed alpha
Helix 16	16	C	24	32	Right-handed alpha
Helix 17	17	C	35	49	Right-handed alpha
Helix 18	18	C	61	65	Right-handed 310
Helix 19	19	C	81	91	Right-handed alpha
Helix 20	20	C	116	127	Right-handed alpha
Helix 21	21	C	154	158	Right-handed 310
Helix 22	22	D	7	20	Right-handed alpha
Helix 23	23	D	24	33	Right-handed alpha
Helix 24	24	D	35	49	Right-handed alpha
Helix 25	25	D	61	65	Right-handed 310
Helix 26	26	D	81	92	Right-handed alpha
Helix 27	27	D	116	127	Right-handed alpha
Helix 28	28	D	154	158	Right-handed 310
Helix 29	29	E	7	20	Right-handed alpha
Helix 30	30	E	24	32	Right-handed alpha
Helix 31	31	E	35	49	Right-handed alpha
Helix 32	32	E	61	65	Right-handed 310
Helix 33	33	E	81	91	Right-handed alpha
Helix 34	34	E	116	127	Right-handed alpha
Helix 35	35	E	154	158	Right-handed 310
Helix 36	36	F	7	20	Right-handed alpha
Helix 37	37	F	24	33	Right-handed alpha
Helix 38	38	F	35	49	Right-handed alpha
Helix 39	39	F	61	65	Right-handed 310
Helix 40	40	F	81	92	Right-handed alpha
Helix 41	41	F	116	127	Right-handed alpha
Helix 42	42	F	154	158	Right-handed 310
Helix 43	43	G	1	6	Right-handed alpha
Helix 44	44	G	7	20	Right-handed alpha
Helix 45	45	G	24	32	Right-handed alpha
Helix 46	46	G	35	49	Right-handed alpha
Helix 47	47	G	61	65	Right-handed 310
Helix 48	48	G	81	93	Right-handed alpha
Helix 49	49	G	116	127	Right-handed alpha
Helix 50	50	G	154	158	Right-handed 310
Helix 51	51	H	7	20	Right-handed alpha
Helix 52	52	H	24	32	Right-handed alpha
Helix 53	53	H	35	49	Right-handed alpha
Helix 54	54	H	61	65	Right-handed 310
Helix 55	55	H	81	91	Right-handed alpha
Helix 56	56	H	116	127	Right-handed alpha
Helix 57	57	H	154	158	Right-handed 310

There are 8 sheets in PDB entry 2P5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	59	first strand
Strand 2	B	52	59	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	76	first strand
Strand 2	A	108	114	anti-parallel
Strand 3	A	96	102	anti-parallel
Strand 4	B	134	148	anti-parallel
Strand 5	B	68	76	anti-parallel
Strand 6	B	108	114	anti-parallel
Strand 7	B	96	102	anti-parallel
Strand 8	A	134	148	anti-parallel
Strand 9	A	68	76	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	59	first strand
Strand 2	D	52	59	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	76	first strand
Strand 2	C	108	114	anti-parallel
Strand 3	C	96	102	anti-parallel
Strand 4	D	134	148	anti-parallel
Strand 5	D	68	76	anti-parallel
Strand 6	D	108	114	anti-parallel
Strand 7	D	96	102	anti-parallel
Strand 8	C	134	148	anti-parallel
Strand 9	C	68	76	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	59	first strand
Strand 2	F	52	59	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	76	first strand
Strand 2	E	108	114	anti-parallel
Strand 3	E	96	102	anti-parallel
Strand 4	F	134	148	anti-parallel
Strand 5	F	68	76	anti-parallel
Strand 6	F	108	114	anti-parallel
Strand 7	F	96	102	anti-parallel
Strand 8	E	134	148	anti-parallel
Strand 9	E	68	76	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	59	first strand
Strand 2	H	52	59	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	76	first strand
Strand 2	G	108	114	anti-parallel
Strand 3	G	96	102	anti-parallel
Strand 4	H	134	148	anti-parallel
Strand 5	H	68	76	anti-parallel
Strand 6	H	108	114	anti-parallel
Strand 7	H	96	102	anti-parallel
Strand 8	G	134	148	anti-parallel
Strand 9	G	68	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2P5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5V