Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P5Y entry

There is 1 chain in PDB entry 2P5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2P5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
54 66Right-handed alpha
Helix 4
4
A
78 85Right-handed alpha
Helix 5
5
A
85 94Right-handed alpha
Helix 6
6
A
94 107Right-handed alpha
Helix 7
7
A
118 123Right-handed alpha
Helix 8
8
A
141 162Right-handed alpha
Helix 9
9
A
184 197Right-handed alpha
Helix 10
10
A
220 234Right-handed alpha
Helix 11
11
A
248 260Right-handed alpha
Helix 12
12
A
282 287Right-handed alpha
Helix 13
13
A
295 309Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2P5Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
69 72parallel
Strand 5
A
111 117parallel
Strand 6
A
165 170parallel
Strand 7
A
236 240parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
217 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
265 268parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
246 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il