Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P5Z entry

There is 1 chain in PDB entry 2P5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 HIS 15LYS 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2P5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
55 59Right-handed 310
Helix 2
2
X
110 117Right-handed 310
Helix 3
3
X
128 139Right-handed alpha
Helix 4
4
X
168 181Right-handed alpha
Helix 5
5
X
202 206Right-handed 310
Helix 6
6
X
295 307Right-handed alpha
Helix 7
7
X
334 340Right-handed alpha
Helix 8
8
X
456 458Right-handed 310
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There are 5 sheets in PDB entry 2P5Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
16 19first strand
Strand 2
X
63 68anti-parallel
Strand 3
X
83 97anti-parallel
Strand 4
X
102 109anti-parallel
Strand 5
X
42 49anti-parallel
Strand 6
X
27 36anti-parallel
Strand 7
X
341 351anti-parallel
Strand 8
X
324 328anti-parallel
Strand 9
X
207 212parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
16 19first strand
Strand 2
X
63 68anti-parallel
Strand 3
X
83 97anti-parallel
Strand 4
X
102 109anti-parallel
Strand 5
X
42 49anti-parallel
Strand 6
X
27 36anti-parallel
Strand 7
X
341 351anti-parallel
Strand 8
X
357 364anti-parallel
Strand 9
X
309 315anti-parallel
Strand 10
X
228 235anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
122 127first strand
Strand 2
X
159 164anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
148 151first strand
Strand 2
X
194 200parallel
Strand 3
X
183 189anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
424 427first strand
Strand 2
X
407 410anti-parallel
Strand 3
X
385 389anti-parallel
Strand 4
X
449 454anti-parallel
Strand 5
X
462 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il