Analysis of interatomic Contacts of Structural Units in PDB entry:
2P6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2P6F entry

There are 3 chains in PDB entry 2P6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	LEU 455
B	ASP 5	LEU 455
C	ASP 5	LYS 362

There are 91 helices in PDB entry 2P6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	18	Right-handed alpha
Helix 2	2	A	40	44	Right-handed 310
Helix 3	3	A	64	68	Right-handed 310
Helix 4	4	A	88	103	Right-handed alpha
Helix 5	5	A	116	124	Right-handed alpha
Helix 6	6	A	130	132	Right-handed 310
Helix 7	7	A	158	161	Right-handed 310
Helix 8	8	A	175	178	Right-handed 310
Helix 9	9	A	181	196	Right-handed alpha
Helix 10	10	A	225	232	Right-handed alpha
Helix 11	11	A	242	250	Right-handed alpha
Helix 12	12	A	265	267	Right-handed 310
Helix 13	13	A	268	281	Right-handed alpha
Helix 14	14	A	290	299	Right-handed alpha
Helix 15	15	A	366	391	Right-handed alpha
Helix 16	16	A	403	407	Right-handed 310
Helix 17	17	B	5	19	Right-handed alpha
Helix 18	18	B	40	44	Right-handed 310
Helix 19	19	B	64	68	Right-handed 310
Helix 20	20	B	88	103	Right-handed alpha
Helix 21	21	B	116	124	Right-handed alpha
Helix 22	22	B	130	132	Right-handed 310
Helix 23	23	B	175	178	Right-handed 310
Helix 24	24	B	181	197	Right-handed alpha
Helix 25	25	B	225	232	Right-handed alpha
Helix 26	26	B	242	250	Right-handed alpha
Helix 27	27	B	268	281	Right-handed alpha
Helix 28	28	B	290	299	Right-handed alpha
Helix 29	29	B	305	309	Right-handed 310
Helix 30	30	B	366	390	Right-handed alpha
Helix 31	31	B	404	409	Right-handed alpha
Helix 32	32	B	410	412	Right-handed 310
Helix 33	33	C	6	18	Right-handed alpha
Helix 34	34	C	40	44	Right-handed 310
Helix 35	35	C	90	101	Right-handed alpha
Helix 36	36	C	116	124	Right-handed alpha
Helix 37	37	C	130	132	Right-handed 310
Helix 38	38	C	175	178	Right-handed 310
Helix 39	39	C	181	196	Right-handed alpha
Helix 40	40	C	225	232	Right-handed alpha
Helix 41	41	C	242	250	Right-handed alpha
Helix 42	42	C	268	281	Right-handed alpha
Helix 43	43	C	292	299	Right-handed alpha
Helix 44	44	C	305	309	Right-handed 310
Helix 45	45	C	366	391	Right-handed alpha
Helix 46	46	C	404	409	Right-handed alpha
Helix 47	47	D	6	19	Right-handed alpha
Helix 48	48	D	40	44	Right-handed 310
Helix 49	49	D	88	103	Right-handed alpha
Helix 50	50	D	116	124	Right-handed alpha
Helix 51	51	D	130	134	Right-handed 310
Helix 52	52	D	157	161	Right-handed 310
Helix 53	53	D	175	178	Right-handed 310
Helix 54	54	D	181	196	Right-handed alpha
Helix 55	55	D	225	232	Right-handed alpha
Helix 56	56	D	242	250	Right-handed alpha
Helix 57	57	D	268	280	Right-handed alpha
Helix 58	58	D	281	283	Right-handed 310
Helix 59	59	D	290	299	Right-handed alpha
Helix 60	60	D	366	391	Right-handed alpha
Helix 61	61	D	404	409	Right-handed alpha
Helix 62	62	E	9	16	Right-handed alpha
Helix 63	63	E	40	44	Right-handed 310
Helix 64	64	E	64	68	Right-handed 310
Helix 65	65	E	88	103	Right-handed alpha
Helix 66	66	E	106	109	Right-handed 310
Helix 67	67	E	116	124	Right-handed alpha
Helix 68	68	E	130	132	Right-handed 310
Helix 69	69	E	175	178	Right-handed 310
Helix 70	70	E	181	196	Right-handed alpha
Helix 71	71	E	225	231	Right-handed alpha
Helix 72	72	E	242	251	Right-handed alpha
Helix 73	73	E	265	267	Right-handed 310
Helix 74	74	E	268	280	Right-handed alpha
Helix 75	75	E	281	283	Right-handed 310
Helix 76	76	E	290	299	Right-handed alpha
Helix 77	77	E	357	360	Right-handed 310
Helix 78	78	E	366	391	Right-handed alpha
Helix 79	79	E	403	407	Right-handed 310
Helix 80	80	F	5	18	Right-handed alpha
Helix 81	81	F	88	103	Right-handed alpha
Helix 82	82	F	116	124	Right-handed alpha
Helix 83	83	F	130	132	Right-handed 310
Helix 84	84	F	183	196	Right-handed alpha
Helix 85	85	F	225	232	Right-handed alpha
Helix 86	86	F	242	251	Right-handed alpha
Helix 87	87	F	268	281	Right-handed alpha
Helix 88	88	F	293	298	Right-handed alpha
Helix 89	89	F	366	391	Right-handed alpha
Helix 90	90	F	401	407	Right-handed 310
Helix 91	91	F	408	412	Right-handed 310

There are 23 sheets in PDB entry 2P6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	145	156	anti-parallel
Strand 4	A	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	145	156	anti-parallel
Strand 4	A	287	288	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	334	336	anti-parallel
Strand 3	A	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	206	first strand
Strand 2	A	414	425	anti-parallel
Strand 3	A	213	223	anti-parallel
Strand 4	A	395	398	anti-parallel
Strand 5	A	347	354	parallel
Strand 6	A	323	331	anti-parallel
Strand 7	A	311	317	anti-parallel
Strand 8	A	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	144	158	anti-parallel
Strand 4	B	161	173	anti-parallel
Strand 5	B	201	206	parallel
Strand 6	B	414	425	anti-parallel
Strand 7	B	215	223	anti-parallel
Strand 8	B	395	398	anti-parallel
Strand 9	B	347	355	parallel
Strand 10	B	323	331	anti-parallel
Strand 11	B	311	317	anti-parallel
Strand 12	B	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	144	158	anti-parallel
Strand 4	B	285	287	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	334	336	anti-parallel
Strand 3	B	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	147	158	anti-parallel
Strand 4	C	161	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	147	158	anti-parallel
Strand 4	C	285	287	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	334	336	anti-parallel
Strand 3	C	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	206	first strand
Strand 2	C	414	425	anti-parallel
Strand 3	C	215	223	anti-parallel
Strand 4	C	395	398	anti-parallel
Strand 5	C	347	355	parallel
Strand 6	C	323	331	anti-parallel
Strand 7	C	311	317	anti-parallel
Strand 8	C	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	137	139	anti-parallel
Strand 3	D	145	156	anti-parallel
Strand 4	D	163	173	anti-parallel
Strand 5	D	202	206	parallel
Strand 6	D	419	425	anti-parallel
Strand 7	D	213	218	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	334	336	anti-parallel
Strand 3	D	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	395	398	anti-parallel
Strand 3	D	347	355	parallel
Strand 4	D	323	331	anti-parallel
Strand 5	D	311	317	anti-parallel
Strand 6	D	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	134	139	anti-parallel
Strand 3	E	145	158	anti-parallel
Strand 4	E	161	173	anti-parallel
Strand 5	E	201	206	parallel
Strand 6	E	419	425	anti-parallel
Strand 7	E	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	83	first strand
Strand 2	E	134	139	anti-parallel
Strand 3	E	145	158	anti-parallel
Strand 4	E	285	288	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	334	336	anti-parallel
Strand 3	E	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	395	398	anti-parallel
Strand 3	E	347	350	parallel
Strand 4	E	323	331	anti-parallel
Strand 5	E	311	317	anti-parallel
Strand 6	E	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	395	398	anti-parallel
Strand 3	E	347	350	parallel
Strand 4	E	323	331	anti-parallel
Strand 5	E	354	355	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	80	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	145	158	anti-parallel
Strand 4	F	161	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	80	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	145	158	anti-parallel
Strand 4	F	285	288	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	113	first strand
Strand 2	F	334	336	anti-parallel
Strand 3	F	344	345	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	206	first strand
Strand 2	F	414	425	anti-parallel
Strand 3	F	213	223	anti-parallel
Strand 4	F	395	398	anti-parallel
Strand 5	F	347	355	parallel
Strand 6	F	323	331	anti-parallel
Strand 7	F	311	317	anti-parallel
Strand 8	F	261	262	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2P6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
2P6F