Analysis of interatomic Contacts of Structural Units in PDB entry:
2P7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P7J entry

There are 2 chains in PDB entry 2P7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9LYS 273
B
 ALA 8ASP 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2P7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 45Right-handed alpha
Helix 2
2
A
46 55Right-handed alpha
Helix 3
3
A
57 76Right-handed alpha
Helix 4
4
A
115 123Right-handed alpha
Helix 5
5
A
173 181Right-handed alpha
Helix 6
6
A
204 208Right-handed 310
Helix 7
7
A
220 225Right-handed alpha
Helix 8
8
A
228 234Right-handed alpha
Helix 9
9
A
268 272Right-handed alpha
Helix 10
10
B
9 45Right-handed alpha
Helix 11
11
B
46 55Right-handed alpha
Helix 12
12
B
57 76Right-handed alpha
Helix 13
13
B
115 123Right-handed alpha
Helix 14
14
B
173 181Right-handed alpha
Helix 15
15
B
204 208Right-handed 310
Helix 16
16
B
213 217Right-handed 310
Helix 17
17
B
220 225Right-handed alpha
Helix 18
18
B
228 235Right-handed alpha
Helix 19
19
B
268 274Right-handed alpha
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There are 8 sheets in PDB entry 2P7J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
90 97anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
162 172anti-parallel
Strand 5
A
149 159anti-parallel
Strand 6
A
130 136anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
142 143anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
199 201anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
259 267anti-parallel
Strand 4
A
245 253anti-parallel
Strand 5
A
238 241anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
90 97anti-parallel
Strand 3
B
78 85anti-parallel
Strand 4
B
162 172anti-parallel
Strand 5
B
149 159anti-parallel
Strand 6
B
130 136anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
142 143anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 193anti-parallel
Strand 3
B
199 201anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
188 193anti-parallel
Strand 3
B
259 267anti-parallel
Strand 4
B
245 253anti-parallel
Strand 5
B
237 241anti-parallel
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