Analysis of interatomic Contacts of Structural Units in PDB entry:
2P7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P7M entry

There are 6 chains in PDB entry 2P7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 131
B
 MET 1ARG 130
C
 MET 1LYS 129
D
 MET 1TYR 131
E
 MET 1LEU 128
F
 MET 1ARG 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2P7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
75 77Right-handed 310
Helix 3
3
A
78 89Right-handed alpha
Helix 4
4
A
123 131Right-handed alpha
Helix 5
5
B
14 27Right-handed alpha
Helix 6
6
B
37 40Right-handed 310
Helix 7
7
B
75 77Right-handed 310
Helix 8
8
B
78 88Right-handed alpha
Helix 9
9
B
123 128Right-handed alpha
Helix 10
10
C
14 27Right-handed alpha
Helix 11
11
C
37 40Right-handed 310
Helix 12
12
C
75 77Right-handed 310
Helix 13
13
C
78 89Right-handed alpha
Helix 14
14
C
123 129Right-handed alpha
Helix 15
15
D
14 27Right-handed alpha
Helix 16
16
D
75 77Right-handed 310
Helix 17
17
D
78 88Right-handed alpha
Helix 18
18
D
123 128Right-handed alpha
Helix 19
19
E
14 26Right-handed alpha
Helix 20
20
E
37 40Right-handed 310
Helix 21
21
E
75 77Right-handed 310
Helix 22
22
E
78 90Right-handed alpha
Helix 23
23
E
123 128Right-handed alpha
Helix 24
24
F
14 27Right-handed alpha
Helix 25
25
F
37 40Right-handed 310
Helix 26
26
F
75 77Right-handed 310
Helix 27
27
F
78 89Right-handed alpha
Helix 28
28
F
123 128Right-handed alpha
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There are 6 sheets in PDB entry 2P7M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
4 12parallel
Strand 5
B
69 74anti-parallel
Strand 6
B
116 121parallel
Strand 7
B
106 110anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
116 120anti-parallel
Strand 3
A
69 73parallel
Strand 4
B
4 12anti-parallel
Strand 5
B
52 58parallel
Strand 6
B
41 49anti-parallel
Strand 7
B
29 36anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 36first strand
Strand 2
C
41 49anti-parallel
Strand 3
C
52 58anti-parallel
Strand 4
C
4 12parallel
Strand 5
D
69 74anti-parallel
Strand 6
D
116 121parallel
Strand 7
D
105 110anti-parallel
Strand 8
D
93 94anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 110first strand
Strand 2
C
116 120anti-parallel
Strand 3
C
69 73parallel
Strand 4
D
4 12anti-parallel
Strand 5
D
52 58parallel
Strand 6
D
44 49anti-parallel
Strand 7
D
29 32anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 36first strand
Strand 2
E
41 49anti-parallel
Strand 3
E
52 58anti-parallel
Strand 4
E
4 12parallel
Strand 5
F
69 74anti-parallel
Strand 6
F
116 121parallel
Strand 7
F
105 110anti-parallel
Strand 8
F
93 94anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
106 110first strand
Strand 2
E
116 120anti-parallel
Strand 3
E
69 73parallel
Strand 4
F
4 12anti-parallel
Strand 5
F
52 58parallel
Strand 6
F
41 49anti-parallel
Strand 7
F
29 36anti-parallel
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